Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0941 ATGGAGGGACAGATGCAAGCAAGGGATCAAGATAACAGTGGGGAAATGCATGACTTCAATTTAACTACTATATTGACTGCTATGAACCGCTTCTCTGATGCCAATAAGCTTGGAGAGGGAGGTTCTGGGCCTGTTTACAAGGTTAAGCTGCATAATGGGAAGAGAGCAGTTAAAAGGCTTTCGAGGAAATCAGGGCAAGGTCTTGAAGGGTTCAAGAATGAAGTTATGTTAATTGTTAAACTTCAACACAAGAATCTTGTGAGGCTGCTGGGTTGCTGCATAGGGAGAGAGGAAAAGCTCCTTGTCTATGAGTACATGGCCAACACTAGTCTTGATGCCTTTCTATTTGGCAACTAG 357 0.4342 MEGQMQARDQDNSGEMHDFNLTTILTAMNRFSDANKLGEGGSGPVYKVKLHNGKRAVKRLSRKSGQGLEGFKNEVMLIVKLQHKNLVRLLGCCIGREEKLLVYEYMANTSLDAFLFGN* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0941 118 ProSiteProfiles Protein kinase domain profile. 31 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0941 118 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 116 - -
Vvi15g0941 118 FunFam Os08g0179000 protein 4 105 - -
Vvi15g0941 118 Pfam Protein tyrosine and serine/threonine kinase 35 115 IPR001245 GO:0004672|GO:0006468
Vvi15g0941 118 SUPERFAMILY Protein kinase-like (PK-like) 14 118 IPR011009 -
Vvi15g0941 118 Gene3D Phosphorylase Kinase; domain 1 5 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0941 Vvi-Chr15 17943519 17944199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0941 19 116 Receptor kinase-like Gene Family AT4G23190 61.616 9.58e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi15g0941 PK_Tyr_Ser-Thr 3.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0941 - - vvi:104881932 234.958