Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0934 ATGCGGCATACTATTGAAGGCATGGGGGGGCGTGCCCTGGTTTTTGTGATGAGAAAGACACTGACACGATCCGATGTGGCTGTGCATCAGGGTCGGCTTTTCATCACCAACGATAAGGTGCTTCGGGGCCAGTTATCCGAGGAGGAGCAGACGGAGCTGAAGACATCAGAAGGGTACGTTAATGTTGAAGTGGTGGATCCGAGAGGGGAGGGGTATGAGATGAAGTTGAAGGAATGGAAGAGTCTCAAGATGTTTGTGTTAACTTCTGGATGGAACAGGCTTGTCAACGATAATGAGCTGGAGGCGGAGATACATTGTATTGAGCTGTGGAGTTTTAGGGTGGGTTTGAAGCTGTGCTTTGCTTTCGGTTTGCTTAATTTGCTTTGTATTTTGATGTGGAGTCGCTCCTGTTGGGGTTTTTTTTTTTCCTTCGGTTTCCTTTGA 444 0.4775 MRHTIEGMGGRALVFVMRKTLTRSDVAVHQGRLFITNDKVLRGQLSEEEQTELKTSEGYVNVEVVDPRGEGYEMKLKEWKSLKMFVLTSGWNRLVNDNELEAEIHCIELWSFRVGLKLCFAFGLLNLLCILMWSRSCWGFFFSFGFL* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0934 147 CDD B3_DNA 19 122 IPR003340 GO:0003677
Vvi15g0934 147 Gene3D - 7 122 IPR015300 -
Vvi15g0934 147 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 2 122 IPR005508 GO:0003677
Vvi15g0934 147 Pfam B3 domain-containing protein At2g31720-like 15 96 IPR005508 GO:0003677
Vvi15g0934 147 SUPERFAMILY DNA-binding pseudobarrel domain 16 122 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0934 Vvi-Chr15 17854009 17854452 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0934 1 121 B3 DNA Binding Superfamily AT1G05930 28.125 8.24e-09 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi15g0934 DUF313 6.8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0934 - - vvi:104881964 154.066