Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0933 ATGAGGACCTTCCAGCTACTTGGTACTAAGACATTGGTGCTGGATGAAGGAGAAGCAATGCGGCATACCCTTGAACGCATGGGGGGGCATGACCTGGCTTGGGCGATGAGCAAGACAATCACAGCATCCGATACGAAGAAGGGTCAGAGTAGGCTTCTCATCCCCAAAGAGAAGGGGCTGTGGGACCAGTTGTCGGAGGAGGAGCAGATGGAGCTGCGGAGAAGAGGCTACGTTGAAGTTGAAGTGGTGGATCCGAGAGGGAACAGGCATGAGATGAAGTTGAGTCAATGGCCTGCTGGGCGTAATCTTGTGTTGAATTCTGGATGGAACGACCTTGTGAGGGATAATAAACTGGAAGCGGGGATCCATTGTACGCTGTGGAGTTTTAGAGTGGGTTTGAGGCTTTGCTTTGCATTGTGTGTCTAG 426 0.5164 MRTFQLLGTKTLVLDEGEAMRHTLERMGGHDLAWAMSKTITASDTKKGQSRLLIPKEKGLWDQLSEEEQMELRRRGYVEVEVVDPRGNRHEMKLSQWPAGRNLVLNSGWNDLVRDNKLEAGIHCTLWSFRVGLRLCFALCV* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0933 141 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 20 139 IPR005508 GO:0003677
Vvi15g0933 141 Pfam B3 domain-containing protein At2g31720-like 20 114 IPR005508 GO:0003677
Vvi15g0933 141 CDD B3_DNA 38 140 IPR003340 GO:0003677
Vvi15g0933 141 SUPERFAMILY DNA-binding pseudobarrel domain 37 140 IPR015300 -
Vvi15g0933 141 Gene3D - 31 139 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0933 Vvi-Chr15 17845704 17846129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0933 20 139 B3 DNA Binding Superfamily AT1G05930 32.558 1.82e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi15g0933 DUF313 3.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0933 - - vvi:104881958 282.722