Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0926 ATGCAGCCGAATCAAAACGAAGAGGTGAAGATCATCAGACTGTTTGGAGTGGAGATGGCGCCCAATAAAAAAGAAGGAATGAAGATGGAGCCTCCTAAAGAACAAGAAACCAAGCGACCTGAAAGGAGGAGGAGCGCAATCAAGAAAACCCGAACCTCATCACCGCCTTTACCTCCAGCCCCGTTACCTTCTCCACTGCTGCAGACGATTCATGACATGGAGGGCAAGGATCAGGTTTTTATTACCAGAAAGATACTAGAATGGTCAGACACTGATGCGGGTCAGAACAGATTTTTCATTCCAAAGAATGAGGTGCTATGGGAGGTCTTATCTGAGGAGGAGAGGAGGCAGGTGGAAGGAGGCGGGGGCGTTGAAGTAATGGTGGTGGATCCGAAAGGTGGGAAGCACGATATGAGGTTGAAGAAGTGGGTTAGTTTAAACATGATAGTGCTGAATTCTGGGTGGCGAAAGCTTGTGGAGGGCAACGACCTGAAGGCAGAGCTGGATTGTGTAGAGCTGTGGAGTTTCAGGGCGGACTCGAAGCTGTGTTTTGCCTTGAATGTCAAGAGACAAGTCCAGTAA 582 0.488 MQPNQNEEVKIIRLFGVEMAPNKKEGMKMEPPKEQETKRPERRRSAIKKTRTSSPPLPPAPLPSPLLQTIHDMEGKDQVFITRKILEWSDTDAGQNRFFIPKNEVLWEVLSEEERRQVEGGGGVEVMVVDPKGGKHDMRLKKWVSLNMIVLNSGWRKLVEGNDLKAELDCVELWSFRADSKLCFALNVKRQVQ* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0926 193 SUPERFAMILY DNA-binding pseudobarrel domain 77 188 IPR015300 -
Vvi15g0926 193 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 20 191 IPR005508 GO:0003677
Vvi15g0926 193 MobiDBLite consensus disorder prediction 23 43 - -
Vvi15g0926 193 CDD B3_DNA 130 184 IPR003340 GO:0003677
Vvi15g0926 193 Gene3D - 71 193 IPR015300 -
Vvi15g0926 193 Pfam B3 domain-containing protein At2g31720-like 63 160 IPR005508 GO:0003677
Vvi15g0926 193 MobiDBLite consensus disorder prediction 20 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0926 Vvi-Chr15 17727656 17728237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0926 66 186 B3 DNA Binding Superfamily AT1G05930 33.333 1.16e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0926 - - vvi:104881963 354.755