Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0925 ATGAGACTGTTTGGAGTGGAGATGGAGCCAAAGGAAAAAGAACAAGAAACGAAGATGGAGCCAAAGGAAAAGGAACAAGAAACGAAGCGAACAAAGAAGAGAAAGTCCGCGAGGTTATTTGGACGAGACCTTGTTCCTGAAAGGAAGAGGAGCAAAATAAAGAAAACCCGAAGCTCATCACCACCTTTACCTCCAGCCCCGTTACCTTTTCCACTGCTGCAGGCGATTCATGACATGGAGGGGAGGGATCAGGTTTTTGTTACCACAAAGATACTAGAACGGTCAGACACTGATGCGGGTCAGAACCGATTTTTCATTCCAAAGAGTGAAGTGCTATGGGGGGTGCTAACTGAGGAGGAGAGGACGCAGGTGGAAGGAGGAGGGGGCGTTGAAGCAATGGTGGTGGATCCGAGAGGTTGGAAGTACAATATGAGGTTGAAGAAGTGGGTTAGTTTGAATAAGGTTGTGCTGAATTCTGGGTGGCGAAAGCTTGTGGAAGATAACGAGTTGATGGCAGAGATGGATTGCGTAGAGCTATGGAGTTTTAGGGCGGATTCGAAGCTGTGTTTTGCCTTGAATGTCAAGAGAGACCAACGTCCAATGATTCATAACATGGAGGGAAGGGATCAGGTTTTTGTTACGAGGAAAATATTGGAGCGGTCTGACGTTGACGCGGGTCAGAATCGATTTTTTGTCCCAAAGAGTGAGGTGCTATGGGGGGTCTTATCAGAGGAGGAGAAGAGGGAGGTGGAAGGAAGAGGGGGCGTTGAAGTAATGGTGTTAGATCCGAGGGGTGGGAAGTACACTATGAGGTTGAAGAAGTGGGTTAGTTTGAATAAAGTAGTCCTGAATTCTGGGTGGCGAAAGCTTGTGGAAGATAACGGGCTGAAGGCAGAGGTGGATTGTGTAGAGCTATGGAGTTTTAGGGCGGATTCGAAGCTGTGTTTTGCCTTGAATGCCAAGAGAGATGGAAGTCTAGTAATTAATCTTTAA 993 0.4713 MRLFGVEMEPKEKEQETKMEPKEKEQETKRTKKRKSARLFGRDLVPERKRSKIKKTRSSSPPLPPAPLPFPLLQAIHDMEGRDQVFVTTKILERSDTDAGQNRFFIPKSEVLWGVLTEEERTQVEGGGGVEAMVVDPRGWKYNMRLKKWVSLNKVVLNSGWRKLVEDNELMAEMDCVELWSFRADSKLCFALNVKRDQRPMIHNMEGRDQVFVTRKILERSDVDAGQNRFFVPKSEVLWGVLSEEEKREVEGRGGVEVMVLDPRGGKYTMRLKKWVSLNKVVLNSGWRKLVEDNGLKAEVDCVELWSFRADSKLCFALNAKRDGSLVINL* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0925 330 ProSiteProfiles B3 DNA-binding domain profile. 131 196 IPR003340 GO:0003677
Vvi15g0925 330 SUPERFAMILY DNA-binding pseudobarrel domain 83 197 IPR015300 -
Vvi15g0925 330 CDD B3_DNA 89 190 IPR003340 GO:0003677
Vvi15g0925 330 Gene3D - 78 203 IPR015300 -
Vvi15g0925 330 Gene3D - 204 325 IPR015300 -
Vvi15g0925 330 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 13 197 IPR005508 GO:0003677
Vvi15g0925 330 MobiDBLite consensus disorder prediction 1 50 - -
Vvi15g0925 330 SUPERFAMILY DNA-binding pseudobarrel domain 209 321 IPR015300 -
Vvi15g0925 330 ProSiteProfiles B3 DNA-binding domain profile. 257 322 IPR003340 GO:0003677
Vvi15g0925 330 CDD B3_DNA 216 316 IPR003340 GO:0003677
Vvi15g0925 330 MobiDBLite consensus disorder prediction 1 67 - -
Vvi15g0925 330 Pfam B3 domain-containing protein At2g31720-like 72 166 IPR005508 GO:0003677
Vvi15g0925 330 Pfam B3 domain-containing protein At2g31720-like 202 292 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0925 Vvi-Chr15 17723870 17725906 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0925 215 319 B3 DNA Binding Superfamily AT4G03170 37.383 4.04e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi15g0925 DUF313 1.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0925 - - vvi:109124047 361.303