Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0924 ATGAGGCTCTTTGGTACGGAGATGGTGCCGAATGAAGGAGAAAACGAGATACCACGAATTCCACCACCTCCCTCCCGACTGCCTGCTGCAATGCTGCATCCTATTGAAGGCATGCAGGGGCGTGGCCTAGTTTTGGTGACGAGAAAGACACTGACACGATCCGATGTGGCCGTGCGTCAGGGTCGGCTTTTGATCAGCAAGGGTGAGGTGCTGTGGGGGCAGTTATCGGAGGAGGAGAAGAGGGAGCTGGTGAGACCAAAAGGGTACGTTGAAGTTGAGGTAGTGGATCCGAGGGGGGAGAGGAATGAGATGAAGTTGAGGAGGCGGGGGAGTTCGACTACGCTTGTGTTGAGTTCTGGATGGATAAAGCTTGTGAAGGATAATAAGCTGGAGGCGGGGGTGGATTTTATTGAGTTGTGGAGTTTTAGGATGGGTTTGAAGCTGTGCTTTGCTTTGAATGTTGAGAGACAACTGACAATACCATCCATGATGATGATACATTATTAA 507 0.5069 MRLFGTEMVPNEGENEIPRIPPPPSRLPAAMLHPIEGMQGRGLVLVTRKTLTRSDVAVRQGRLLISKGEVLWGQLSEEEKRELVRPKGYVEVEVVDPRGERNEMKLRRRGSSTTLVLSSGWIKLVKDNKLEAGVDFIELWSFRMGLKLCFALNVERQLTIPSMMMIHY* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0924 168 SUPERFAMILY DNA-binding pseudobarrel domain 47 153 IPR015300 -
Vvi15g0924 168 CDD B3_DNA 49 150 IPR003340 GO:0003677
Vvi15g0924 168 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 21 156 IPR005508 GO:0003677
Vvi15g0924 168 Pfam B3 domain-containing protein At2g31720-like 33 126 IPR005508 GO:0003677
Vvi15g0924 168 Gene3D - 37 160 IPR015300 -
Vvi15g0924 168 SMART B3_2 47 152 IPR003340 GO:0003677
Vvi15g0924 168 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0924 Vvi-Chr15 17718528 17719034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0924 35 152 B3 DNA Binding Superfamily AT1G05930 32.800 3.85e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0924 - - vvi:104881964 293.508