Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0923 ATGAGACTGTTTGGAGTGGAGATGGAGCCAAAGGAAAAAGAACAAGAAACGAAGCGAACAAAGAAGAGAAAGTCCGCGAGGTTATTTGGACGAGACCTTGTTCCTGAAAGGAAGAGGAGCAAAATTAAGAAAACCCGAAGCTCTTCACCACCTTTACCTCCAGCCCCGTTACCTTTTCCACTGCTGCAGGCGATTCATGACATGGAGGGGAGGGATCAGGTTTTTGTTACCACAAAGATACTAGAACGGTCAGACACTGATGCGGGTCAGAACCGATTTTTCATTCCAAAGAGTGAAGTGCTATGGGGGGTGCTAACTGCGGAGGAGAGGAGGCAGGTGGAAGGAGGAGGGGGCGTTGAAGCAATGGTGGTGGATCCGAGAGGTTGGAAGTACAATATGAGGTTAAAGAAGTGGGTTAGTTTGAATAAGGTTGTGCTGAATTCTGGGTGGCGAAAGCTTGTGGAAGATAACGAGTTGATGGCAGAGATGGATAGCGTAGAGCTATGGAGTTTTAGGGCGGATTCGAAGCTGTGTTTTGCCTTGAATGTCAAGAGAGACCAACGTCCAGTAATTAATCTTTGA 582 0.4725 MRLFGVEMEPKEKEQETKRTKKRKSARLFGRDLVPERKRSKIKKTRSSSPPLPPAPLPFPLLQAIHDMEGRDQVFVTTKILERSDTDAGQNRFFIPKSEVLWGVLTAEERRQVEGGGGVEAMVVDPRGWKYNMRLKKWVSLNKVVLNSGWRKLVEDNELMAEMDSVELWSFRADSKLCFALNVKRDQRPVINL* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0923 193 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 11 186 IPR005508 GO:0003677
Vvi15g0923 193 SUPERFAMILY DNA-binding pseudobarrel domain 72 186 IPR015300 -
Vvi15g0923 193 Pfam B3 domain-containing protein At2g31720-like 61 155 IPR005508 GO:0003677
Vvi15g0923 193 Gene3D - 67 190 IPR015300 -
Vvi15g0923 193 MobiDBLite consensus disorder prediction 1 39 - -
Vvi15g0923 193 CDD B3_DNA 78 179 IPR003340 GO:0003677
Vvi15g0923 193 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0923 Vvi-Chr15 17709937 17710518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0923 61 181 B3 DNA Binding Superfamily AT1G05930 32.558 9.70e-11 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi15g0923 DUF313 7e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0923 - - vvi:104881966 337.035