Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0922 ATGATAAGACTGTTTGGAGTGGAGATGACGCCGAATGAAAAACCAAAGGAAACCAAGAGAGGAAAGAAGAGAAGGTCCACCATGATATTTGGAAGAGATTTGGTTCCTGAGAGGAGGAGGAGCGCAATTAAGAAAACCAGAACCTCATCACCGCCTTTACCTCCAGCCCCGTTTCCTTTTCCACTGTTGCAGATGATTCATAACATGGAGGGGAGGGATCAGGTTTTTGTTACGAGGAAAATATTGGAGCGGTCTGACGTTGACGCGGGTCAGAATCGATTTTTTGTCCCAAAGAGTGAGGTGCTATGGGGGGTCTTATCAGAGGAGGAGAAGAGGGAGGTGGAAGGAAGAGGGGGAGTTGAAGTAATGGTGTTAGATCCGAGGGGTGGGAAGTACACTATGAGGTTGAAGAAGTGGGTTAGTTTGAATAAAGTAGTCCTGAATTCTGGGTGGCGAAAGCTTGTGGAAGATAACGGGCTGAAGGCAGAGGTGGATTGTGTAGAGCTATGGAGTTTTAGGGCGGATTCGAAGCTGTGTTTTGCCTTGAATGTCAAGAGAGATGGAAGTTTTGATGGTCAACGGAATGGCTTTTTGTTGCATATTATCATCTTGTTACAGTCCCAATCCTCAACCCATCTACAAATAACGGTGGAGGGAGGCGGGGGCGTTGAAGTAATGGTGGTGGATCCGAGAGGTGGGAAGCACGATATGAGGTTGAAGAAGTGGGTTAGTTTAAACAAGATAGTGCTGAATTCTGGGTGGCGAAAGCTTGTGGACGGCAACGACCTGAAGGCAGAGCTGGATTGTGTGGAGCTGTGGAGTTTCAGGGCGGACTCGAAGCTGTGTTTTGCCTTGAATGTCAAGAGACAAGTCCAGTAA 879 0.4755 MIRLFGVEMTPNEKPKETKRGKKRRSTMIFGRDLVPERRRSAIKKTRTSSPPLPPAPFPFPLLQMIHNMEGRDQVFVTRKILERSDVDAGQNRFFVPKSEVLWGVLSEEEKREVEGRGGVEVMVLDPRGGKYTMRLKKWVSLNKVVLNSGWRKLVEDNGLKAEVDCVELWSFRADSKLCFALNVKRDGSFDGQRNGFLLHIIILLQSQSSTHLQITVEGGGGVEVMVVDPRGGKHDMRLKKWVSLNKIVLNSGWRKLVDGNDLKAELDCVELWSFRADSKLCFALNVKRQVQ* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0922 292 SUPERFAMILY DNA-binding pseudobarrel domain 73 184 IPR015300 -
Vvi15g0922 292 ProSiteProfiles B3 DNA-binding domain profile. 121 186 IPR003340 GO:0003677
Vvi15g0922 292 CDD B3_DNA 80 180 IPR003340 GO:0003677
Vvi15g0922 292 Gene3D - 199 292 IPR015300 -
Vvi15g0922 292 Gene3D - 68 193 IPR015300 -
Vvi15g0922 292 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 220 290 IPR005508 GO:0003677
Vvi15g0922 292 CDD B3_DNA 229 283 IPR003340 GO:0003677
Vvi15g0922 292 MobiDBLite consensus disorder prediction 1 25 - -
Vvi15g0922 292 Pfam B3 domain-containing protein At2g31720-like 62 156 IPR005508 GO:0003677
Vvi15g0922 292 SUPERFAMILY DNA-binding pseudobarrel domain 218 287 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0922 Vvi-Chr15 17707889 17708863 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0922 222 286 B3 DNA Binding Superfamily AT4G03170 37.313 7.06e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi15g0922 DUF313 6.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0922 - - vvi:104881966 292.737