Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0921 ATGAGACTGTTTGGAGTGGAGATGGAGCCAAAGGAAAAAGAACAAGAAACGAAGATGGAGCCAAAGGAAAAAGAACAAGAAACGAAGCGAACAAAGAAGAGAAAGTCCGCGAGGTTATTTGGACGAGACCTTGTTCCTGAAAGGAAGAGGAGCAAAATAAAGAAAACCCGAAGCTCTTCACCACCTTTACCTCCAGCCCCGTTACCTTTTCCACTGCTGCAGGCGATTCATGACATGGAGGGGAGGGATCAGGTTTTTGTTACCACAAAGATACTAGAACGGTCAGACACTGATGCGGGTCAGAACCGATTTTTCATTCCAAAGAGTGAAGTGCTATGGGGGGTGCTAACTGAGGAGGAGAGGACGCAGGTGGAAGGAGGAGGGGGCGTTGAAGCAATGGTGGTGGATCCGAGAGGTTGGAAGTACAATTTGAGGTTGAAGAAGTGGGTTAGTTTGAATAAGGTCGTGCTGAATTCTGGGTGGCGAAAGCTTGTGGAAGATAACGAGTTGATGGCAGAGATGGATTGCGTAGAGCTATGGAGTTTTAGGGCAGATTCGAAGCTGTGTTTTGCCTTGAATGTCAAGAGAGACCAACGTCCAGTTTTTGTTACGAGGAAAATATTGGAGCGGTCTGACGTTGACGCGGGTCAGAATCGAATTTTTGTCCCAAAGAGTGAGGTGCTATGGGGGGTCTTATCAGAGGAGGAGAAGAGGGAGGTGGAAGGAGGAGGGGGCGTTGAAGTAATGGTGTTAGATCCGAGGGGTGGGAAGTACACTATGAGGTTGAAGAAGTGGGTTAGTTTGAATAAAGTAGTCCTGAATTCTGGGTGGCGAAAGCTTGCGGAAGATAACGGGCTGAAGGCAGAGGTGGATTGTGTAGAGCTATGGAGTTTTTAG 897 0.4783 MRLFGVEMEPKEKEQETKMEPKEKEQETKRTKKRKSARLFGRDLVPERKRSKIKKTRSSSPPLPPAPLPFPLLQAIHDMEGRDQVFVTTKILERSDTDAGQNRFFIPKSEVLWGVLTEEERTQVEGGGGVEAMVVDPRGWKYNLRLKKWVSLNKVVLNSGWRKLVEDNELMAEMDCVELWSFRADSKLCFALNVKRDQRPVFVTRKILERSDVDAGQNRIFVPKSEVLWGVLSEEEKREVEGGGGVEVMVLDPRGGKYTMRLKKWVSLNKVVLNSGWRKLAEDNGLKAEVDCVELWSF* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0921 298 CDD B3_DNA 89 190 IPR003340 GO:0003677
Vvi15g0921 298 Pfam B3 domain-containing protein At2g31720-like 72 166 IPR005508 GO:0003677
Vvi15g0921 298 CDD B3_DNA 200 288 IPR003340 GO:0003677
Vvi15g0921 298 Pfam B3 DNA binding domain 243 289 IPR003340 GO:0003677
Vvi15g0921 298 SUPERFAMILY DNA-binding pseudobarrel domain 200 296 IPR015300 -
Vvi15g0921 298 ProSiteProfiles B3 DNA-binding domain profile. 247 298 IPR003340 GO:0003677
Vvi15g0921 298 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 199 298 IPR005508 GO:0003677
Vvi15g0921 298 MobiDBLite consensus disorder prediction 1 50 - -
Vvi15g0921 298 Gene3D - 78 198 IPR015300 -
Vvi15g0921 298 Gene3D - 199 298 IPR015300 -
Vvi15g0921 298 SUPERFAMILY DNA-binding pseudobarrel domain 83 196 IPR015300 -
Vvi15g0921 298 ProSiteProfiles B3 DNA-binding domain profile. 131 196 IPR003340 GO:0003677
Vvi15g0921 298 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0921 Vvi-Chr15 17704147 17706138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0921 72 192 B3 DNA Binding Superfamily AT1G05930 32.558 9.88e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi15g0921 DUF313 3.3e-10 CL0405