Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0920 ATGATATTTGGAAGAGATTTGGTTCCTGAAATGAGGAGGAGCGCAATTAACAAAACCCGAACCTCATCGCCGCCTTTACCTCCAGTCCCGTTTCCTTTTCCACTGCTGCAGATGATTCATAACATGGAGGGGAGGGATCAGGTTTTTTTTACGAGGAAAATATTGGAGGGATCTGACGTTGACGCGGGTCAGAATCGATTTTTTGTCCCAAAGAGTGAGGTGCTATGGGGGGTCTTATCAGAGGAGGAGAAGAGGGAGGTGGAAGGAGGAGGGGGCGTTGAAGTAATGGTGGTAGATCCGAGGGGTGGGAAGTACACTATGAGGTTGAAGAAGTGGGTTAGTTTGAATAAAGTAGTCCTGAATTCTGGGTGGCGAAAGCTTGTGGAAGATAACGGGCTGAAGGCAGAGGTGGATTGTGTAGAGCTATGGAGTTTTAGGGCGGATTCGAATCTGTGTTTTGCCTTGAATGTCAAGAGAGATGGAAGTCCAGTAATTAATCGTTAA 504 0.4683 MIFGRDLVPEMRRSAINKTRTSSPPLPPVPFPFPLLQMIHNMEGRDQVFFTRKILEGSDVDAGQNRFFVPKSEVLWGVLSEEEKREVEGGGGVEVMVVDPRGGKYTMRLKKWVSLNKVVLNSGWRKLVEDNGLKAEVDCVELWSFRADSNLCFALNVKRDGSPVINR* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0920 167 SUPERFAMILY DNA-binding pseudobarrel domain 46 157 IPR015300 -
Vvi15g0920 167 ProSiteProfiles B3 DNA-binding domain profile. 94 159 IPR003340 GO:0003677
Vvi15g0920 167 Gene3D - 40 163 IPR015300 -
Vvi15g0920 167 CDD B3_DNA 99 153 IPR003340 GO:0003677
Vvi15g0920 167 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 20 159 IPR005508 GO:0003677
Vvi15g0920 167 Pfam B3 domain-containing protein At2g31720-like 35 129 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0920 Vvi-Chr15 17698522 17699025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0920 52 156 B3 DNA Binding Superfamily AT4G03170 36.449 4.97e-11 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi15g0920 DUF313 2.5e-11 CL0405