Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0919 ATGCCGCAAATCAAGCGGTGCAAACTCGAACAGCCTGGTGACGACGTTGCTTCTTTGATAAAACCCAAGAAGCGAAGAATAGATGGGAATGGTCCAGCTGACACGCCTGGCAACGTTGAGGAGGATAGCATTGTTGCAGGTTCTTTGTGCACCGAGATTTCGTACTGTGCCAGCGAAGTGGAGTCGAATTCGAAGGGCAAGAGGAAAGGAAGGAATCCAAAAGCGGAGGGTTCTCGTCCTCCATTATTGCCGTCTTCGCGAGGTCGTCATCGGGCACTTCCTTCGCGATTCAATGACTCGATAATTGATTCATGGACGAAGGAGGATTCAAAGGCTGATGACATGGAATCAAATCTGGATGATTTCGAAGTTGTAGTATATGAAAAGGAGAGAATTGGTACCGGAAGGCAGAAAACTGGCGCATTGAGATTAGAGAAACAGCACAAGGAGGAGACATTTAGATTGCCAAGTTCAAATCTCTATGGACTTTGCGAAAAAGCCGAGGAAGGAGAAGCGGGTTATGTAGGGTTTAGAGAATCCGAGAGCAAAAAATATTCTTGTTCACATAGTTCATTATCCTCATTACATGATGGCCTTAATCCACTTGTAGAAGCTAGTGATTACCCGGGGTTTAACTCCAAAGGTAGGGAGAAAGCAGGGAAGGATAAAACCGAAAAGCGGAAGGATTTCTATAGGCCGGAGGAATTTGTGTTGGGAGATATAGTGTGGGCGAAATCAGGCAAGAGATATCCAGCTTGGCCTGCAATTGTGATTGACCCTGTGTTTGAAGCACCAGAAGCGGTGTTGAGTTCTTGTGTTGCTGATGCAATTTGTGTCATGTTCTTTGGATATTCCAAAAATGGAAAACAAAGGGATTATGCTTGGGTCAAACACGGGATGATATTTCCATTTCTAGAATATCTGGACAGATTTCAAGGGCAGACCCAGTTGCACAAGAGCAAGCCGAGTGATTTTCGGGAGGCAATTGAGGAGGCATTTCTAGCCGAGAACGGTTTTTTTGACACAAACAATGGGAGTGGACAATTATCTCGTACGGAAGAGAATCCCGTTGGGGTTGAAGAAGCCACTGGTTCAAACCAGGATCAGGAATCCCACTCTCAGAACCAGGGTGTATTCAATAATGGGGAGGCACAACCCTGTGATGGTTGTGGCTGTGTTCTACCATGCAAAAGTTCGAAAAAAATGAACAATTCAACTGGTGAAACCCAGCTTTTATGTAAACATTGTGCTAAGTTGCGAAAATCAAAACAATTCTGTGGTGTATGCAAGAAGACATGGCATCACTCAGATGGAGGCAATTGGGTATGTTGTGATGGTTGTAATGTCTGGGTGCATGCTGAATGTGAGAAAATTTCTACCAAACGTTTGAAGGATCTGGAGGACATTGATTATTACTGTCCTGACTGCAAAGCTAAATTCAATTTTGAATTATCAGATTCAGATAAATGGCAGCCCAAAGTCAAGTGTATAGAAAATAATGGACCTCCTGTGCTGCCTGACAAGTTAGCTGTTGTGTGCACAGGAATGGAAGGAATATATCTTCCAAATCTTCATGTGGTTGTTTGCAAGTGTGGTTCATGTGGCACAAGGAAGCAAACACTTAGTGAATGGGAAAGGCATACGGGTTCTAGAGCTAAAAAATGGAAGGCGAGCGTTAAAGTAAAGGATTCTTTAATACCACTGGAAAAATGGCTTGCAGAGTATACTACACATGGTATCAATCCTCTGAAGTTACAAAAACAGCAGTTATTTTCCTTTTTGAAAGAGAAGTATGAACCTGTTCACGCAAAGTGGACAACAGAAAGATGTGCTATTTGTAGATGGGTTGAGGATTGGGACTATAACAAGATGATCATCTGCAACAGGTGTCAAATAGCTGTCCACCAAGAATGCTATGGGGCAAGAAATGTTAAAGATTTTACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGCTAAAAGAGAGTGCTGTCTTTGTCCTGTAAAAGGGGGTGCTCTAAAGCCTACTGATGTTGAAGGACTGTGGGTTCATGTCACGTGTGCTTGGTTTCGGCCTGAAGTTGCTTTCTTGAATGATGAGAAAATGGAGCCTGCTGTTGGAATTCTTAGAATTCCATCTACTTCATTTTTGAAGGTTTGTGTAATTTGTAAGCAGACTCATGGATCCTGCACACAATGTTGCAAGTGTGCCACTTATTTTCATGCAATGTGTGCATCAAGAGCAGGATACAGCATGGAATTGCATTGTGGGGAGAAGAATGGAAGACAAATTACGAAAAAGTTATCATATTGTGCTGTTCACAGGGCTCCAAACGCAGATACGGTTTTAGTTGTACGTACTCCTTCAGGGGTGTTCTCTGCCCGAAATCGACAAAACCAGAAACGTGATCAGAGCTTCAGGGGGTCAAGGCTTGTTTCATCCAGAAGACCGGAACTTCCTGTATCCTTGGCATTAGAGACTAATGAGTTGGAGCCACTGTCTGCTGGAAGATGCCGGGTCTTCAAAAGATCAATCAATAATGTGGGTGCAGGGGCAATATTCCACCGACTGATGGGGCCAAGGCATCATTCTTTGGATGCAATAGATGGCTTGAGCTTGTACAAAGAATTAGAAGATCCGCAAACATTTTCTTCATTCAAGGAACGCCTTTACCACTTGCAGAGAACTGAAAATCACCGGGTTTGTTTTGGCAAATCTGGAATACATGGATGGGGCCTCTTTGCACGTCGGAGCATTCAAGAAGGAGAAATGGTTATTGAGTATCGTGGTGAGCAGGTGAGGCGCAGTGTTGCAGATCTTAGGGAGGCAAAGTATCGATTAGAAGGCAAAGATTGTTATCTGTTTAAGATCAGTGAGGAAGTAGTGATTGATGCTACAAACAAGGGGAATATTGCACGCCTAATCAACCATTCTTGCTTCCCCAACTGTTATGCAAGGATCATGAGCGTGGGTGATGAAGAGAGTCGGATAGTCCTAATTGCAAAGATCAATGTCTCAGCAGGGGATGAGCTTACGTACGATTACTTGTTTGATCCAGATGAACGTGACGAATCCAAAGTCCCCTGCCTATGTGGAGCTCCAAACTGCAGGAAATTCATGAATTAG 3129 0.4362 MPQIKRCKLEQPGDDVASLIKPKKRRIDGNGPADTPGNVEEDSIVAGSLCTEISYCASEVESNSKGKRKGRNPKAEGSRPPLLPSSRGRHRALPSRFNDSIIDSWTKEDSKADDMESNLDDFEVVVYEKERIGTGRQKTGALRLEKQHKEETFRLPSSNLYGLCEKAEEGEAGYVGFRESESKKYSCSHSSLSSLHDGLNPLVEASDYPGFNSKGREKAGKDKTEKRKDFYRPEEFVLGDIVWAKSGKRYPAWPAIVIDPVFEAPEAVLSSCVADAICVMFFGYSKNGKQRDYAWVKHGMIFPFLEYLDRFQGQTQLHKSKPSDFREAIEEAFLAENGFFDTNNGSGQLSRTEENPVGVEEATGSNQDQESHSQNQGVFNNGEAQPCDGCGCVLPCKSSKKMNNSTGETQLLCKHCAKLRKSKQFCGVCKKTWHHSDGGNWVCCDGCNVWVHAECEKISTKRLKDLEDIDYYCPDCKAKFNFELSDSDKWQPKVKCIENNGPPVLPDKLAVVCTGMEGIYLPNLHVVVCKCGSCGTRKQTLSEWERHTGSRAKKWKASVKVKDSLIPLEKWLAEYTTHGINPLKLQKQQLFSFLKEKYEPVHAKWTTERCAICRWVEDWDYNKMIICNRCQIAVHQECYGARNVKDFTSWVCRACETPDAKRECCLCPVKGGALKPTDVEGLWVHVTCAWFRPEVAFLNDEKMEPAVGILRIPSTSFLKVCVICKQTHGSCTQCCKCATYFHAMCASRAGYSMELHCGEKNGRQITKKLSYCAVHRAPNADTVLVVRTPSGVFSARNRQNQKRDQSFRGSRLVSSRRPELPVSLALETNELEPLSAGRCRVFKRSINNVGAGAIFHRLMGPRHHSLDAIDGLSLYKELEDPQTFSSFKERLYHLQRTENHRVCFGKSGIHGWGLFARRSIQEGEMVIEYRGEQVRRSVADLREAKYRLEGKDCYLFKISEEVVIDATNKGNIARLINHSCFPNCYARIMSVGDEESRIVLIAKINVSAGDELTYDYLFDPDERDESKVPCLCGAPNCRKFMN* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0919 1042 SMART PostSET_3 1026 1042 IPR003616 -
Vvi15g0919 1042 MobiDBLite consensus disorder prediction 60 98 - -
Vvi15g0919 1042 MobiDBLite consensus disorder prediction 206 225 - -
Vvi15g0919 1042 FunFam Histone-lysine N-methyltransferase 874 1042 - -
Vvi15g0919 1042 Pfam PWWP domain 239 333 IPR000313 -
Vvi15g0919 1042 SUPERFAMILY SET domain 893 1039 IPR046341 -
Vvi15g0919 1042 CDD PWWP_AtATX3-like 237 341 - -
Vvi15g0919 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 777 IPR013083 -
Vvi15g0919 1042 ProSiteProfiles Extended PHD (ePHD) domain profile. 661 776 IPR034732 -
Vvi15g0919 1042 MobiDBLite consensus disorder prediction 340 378 - -
Vvi15g0919 1042 ProSiteProfiles PWWP domain profile. 238 307 IPR000313 -
Vvi15g0919 1042 ProSiteProfiles SET domain profile. 900 1017 IPR001214 GO:0005515
Vvi15g0919 1042 PANTHER PHD FINGER PROTEINS 41 457 - -
Vvi15g0919 1042 SMART PHD_3 609 656 IPR001965 -
Vvi15g0919 1042 SMART PHD_3 720 776 IPR001965 -
Vvi15g0919 1042 SMART PHD_3 425 477 IPR001965 -
Vvi15g0919 1042 ProSitePatterns Zinc finger PHD-type signature. 610 655 IPR019786 -
Vvi15g0919 1042 ProSiteProfiles Zinc finger PHD-type profile. 607 658 IPR019787 -
Vvi15g0919 1042 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 39 1042 IPR025780 -
Vvi15g0919 1042 Pfam PHD-finger 622 656 - -
Vvi15g0919 1042 CDD ePHD_ATX3_4_5_like 664 775 IPR041955 -
Vvi15g0919 1042 MobiDBLite consensus disorder prediction 1 42 - -
Vvi15g0919 1042 Gene3D - 225 340 - -
Vvi15g0919 1042 ProSiteProfiles Post-SET domain profile. 1026 1042 IPR003616 -
Vvi15g0919 1042 Gene3D SET domain 886 1042 IPR046341 -
Vvi15g0919 1042 FunFam Histone-lysine N-methyltransferase 659 778 - -
Vvi15g0919 1042 SMART set_7 900 1023 IPR001214 GO:0005515
Vvi15g0919 1042 Pfam PHD-zinc-finger like domain 663 775 - -
Vvi15g0919 1042 Pfam SET domain 911 1016 IPR001214 GO:0005515
Vvi15g0919 1042 CDD SET_SETD1-like 889 1038 - -
Vvi15g0919 1042 SMART PWWP_4 236 305 IPR000313 -
Vvi15g0919 1042 MobiDBLite consensus disorder prediction 8 30 - -
Vvi15g0919 1042 SUPERFAMILY FYVE/PHD zinc finger 423 481 IPR011011 -
Vvi15g0919 1042 SUPERFAMILY Tudor/PWWP/MBT 229 363 - -
Vvi15g0919 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 420 480 IPR013083 -
Vvi15g0919 1042 FunFam Histone-lysine N-methyltransferase 597 658 - -
Vvi15g0919 1042 CDD PHD_ATX3_4_5_like 609 655 IPR042011 -
Vvi15g0919 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 659 IPR013083 -
Vvi15g0919 1042 ProSiteProfiles Zinc finger PHD-type profile. 423 479 IPR019787 -
Vvi15g0919 1042 Pfam PHD-finger 425 478 IPR019787 -
Vvi15g0919 1042 SUPERFAMILY FYVE/PHD zinc finger 607 672 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0919 Vvi-Chr15 17677786 17689434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0919 610 775 C2H2 Transcription Factor Family AT3G14740 32.948 1.47e-21 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi15g0919 zf-HC5HC2H_2 7.9e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0919 - - vvi:100246631 2154.41