Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0889 ATGATGTCTTCTTGTTTGTCTAGGAATAGAAAACCCGAAAGGTTTTGTTTTTCGTGGATGTTTGAAACAAAGCTTCTGTTCCTGCAGTGCCACAATGGACACACACTCTGTTCAAGCTGTAAAGCAAGGGTACTCAACAAATGTACCAGTTGTAGGCAGCAGCTTGGTGATATAAGGTGTCTAGCTCTGGAGAAGATGACCGAATCACTTCAACTGCATTGTAAGTATGAGGAGTTTGGATGCCCTGAGATCATGCATGAAGACTCGTGTAACTTCCGGCCATACAGCTGCCCATGGCCTGGATTGCCGTGCTCTGCTGTTGGGGATATTCCATTCCTTGTTTCTCACTTGACAGATTATCACAAGGCAGTCATGTTCAATGGCTGCGACTTCGAGCTTGAATTTTTAATTGAAGATCTCCGTAAACACTCAGGCTGCAGATGGTTAGCAATTATCATCAATTGTTATGGCAAATACTTCTGTGTTCATACTGAAGCCTTCTTATTTGCGTGGTATTCCTCAGCCTGA 528 0.4356 MMSSCLSRNRKPERFCFSWMFETKLLFLQCHNGHTLCSSCKARVLNKCTSCRQQLGDIRCLALEKMTESLQLHCKYEEFGCPEIMHEDSCNFRPYSCPWPGLPCSAVGDIPFLVSHLTDYHKAVMFNGCDFELEFLIEDLRKHSGCRWLAIIINCYGKYFCVHTEAFLFAWYSSA* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0889 175 ProSiteProfiles Zinc finger SIAH-type profile. 69 122 IPR013010 GO:0008270
Vvi15g0889 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 117 IPR013083 -
Vvi15g0889 175 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 28 165 - -
Vvi15g0889 175 FunFam E3 ubiquitin-protein ligase SINAT3 66 117 - -
Vvi15g0889 175 Pfam Seven in absentia protein family 58 167 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi15g0889 175 SUPERFAMILY TRAF domain-like 69 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0889 Vvi-Chr15 17398408 17399141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0889 29 170 C3H Transcription Factor Family AT2G41980 48.993 1.85e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0889 K04506 - vvi:100267384 330.487