Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0887 ATGGGAAACCGCGTCGCAGATCTTCACTCCCTAACCAAGTTCCAGGAGATTCTCAAGTGCTCCGTTTGCTTCGACTTTATGCAGTCTCCAATTTATCAGTGCCACAATGGACACACACTCTGTTCAAGCTGTAAAGCAAGGGTACTCAACAAATGTCCCGGTTGTAGGCAGCAGCTCGGTAATATAAGGTGTCTAGCTCTGGAGAAGATGGCCAAATCACTTGAACTGCATTGCAAGTATGAGGAGTTTGGATGCCCTGAGATCATCCCTTACCACACCAAGCTCATGCATGAAGACTCGTGTAACTTCCGGCCATACAGCTGCCCATGGTATGGATGTCCGTGCTCTGCTGTTGGGGATATTCCACTCCTTGTTTCTCACCTGACAGATTATCACAAGGCAGTCATGTTCAATAGCTGCAACTTTAAGCATGGATTTTTAATTGGAGATCTCTATAAAAACCCAGGCCGCAGATGGATAGTAATTATCATCAATTGTTTTGACAAACACTTCTGTCTCCATGCTGAAGCCTTCCTTATAGGGTCGACTCCCGTTTACATGGCATTCCTCAGCCTGATAGGCAACCATGCAGAGGCCGGCAACTACAGCTACAGCCTGCAGATAGGGGGAAATGGGCGGAAGCTTACTTTTGAGGGCGTCCCACAAAGCATTAGAGAGAGTGAGAGGAGGAGTTTGGAGAGTGCGGACAGCCTCATTGTGCCGGGAGGCATGGTGCATTCCTTGGGAGGGGAGACGAGAGAGCCAAAACTTGAAATTACAAGTCGGATATGGAAAACCCAGTGTGGATAA 810 0.4802 MGNRVADLHSLTKFQEILKCSVCFDFMQSPIYQCHNGHTLCSSCKARVLNKCPGCRQQLGNIRCLALEKMAKSLELHCKYEEFGCPEIIPYHTKLMHEDSCNFRPYSCPWYGCPCSAVGDIPLLVSHLTDYHKAVMFNSCNFKHGFLIGDLYKNPGRRWIVIIINCFDKHFCLHAEAFLIGSTPVYMAFLSLIGNHAEAGNYSYSLQIGGNGRKLTFEGVPQSIRESERRSLESADSLIVPGGMVHSLGGETREPKLEITSRIWKTQCG* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0887 269 SUPERFAMILY TRAF domain-like 73 247 - -
Vvi15g0887 269 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 131 263 IPR008974 GO:0005515
Vvi15g0887 269 SUPERFAMILY RING/U-box 14 60 - -
Vvi15g0887 269 FunFam E3 ubiquitin-protein ligase SINAT3 70 128 - -
Vvi15g0887 269 FunFam Uncharacterized protein 8 67 - -
Vvi15g0887 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 67 IPR013083 -
Vvi15g0887 269 ProSiteProfiles Zinc finger RING-type profile. 20 56 IPR001841 -
Vvi15g0887 269 Pfam Seven in absentia protein family 62 253 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi15g0887 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 128 IPR013083 -
Vvi15g0887 269 CDD RING-HC_SIAHs 18 56 - -
Vvi15g0887 269 ProSiteProfiles Zinc finger SIAH-type profile. 73 133 IPR013010 GO:0008270
Vvi15g0887 269 FunFam Pectinesterase 131 257 - -
Vvi15g0887 269 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 14 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0887 Vvi-Chr15 17384876 17387511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0887 5 267 C3H Transcription Factor Family AT2G41980 50.000 3.21e-98 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0887 K04506 - vvi:100257109 567.385