Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi15g0886 | ATGGAATCGGGAGAAAGCAGTGAATGTGTTGCAAGTTCTGGTTGTCATCATCACCACAGGTCCTCCTTGAGGCATCATCAAAACGGCGTCGTTTCCGGGGTTCTTCGTCGCTCCCTCACCATGGTCCTGGAGCTGCTTAAGTGCTCTGTTTGCTTCGATTTTATGTACTCACCTATTTATCATTGCCACAATGGACACACACTCTGTTCAAGCTGTAAAGCAAGGGTACTCAACAAATGTCCCAGTTGTAGGCAGCAGCTCGGTAATATAAGGTGTCTAGCTCTGGAGAAGATGGCCAAATCACTTGAACTGCATTGCTATCATGCTCTATGGCTGCAATTCAAATGTCGATTTTTAATTGCTGATGTCAATGAAGAAGAAACCTGCACATGGATGGTAAAAATCATCAATTGTTATGGCAAATACTTTTGTGTTCATGCTGAAGCCTTCTTTCAAGCGTCGACTCCCATTTGCGTGGTATTCCTCAGCCTGACAGGCAACCATGCAGAGGCCTGCAACTACAGCTGCAGCCTGGAGATAGGGGGAAATGGGCGGAAGCTTACTTTTGAGGGCATCCCACGAAGCATTAGAGAGAGTGAGAGGAGTTTGGAGAGTGCGGACAGTCTCATTGTGCTGGGAAGCATGGTGCATTCCTTAGGAGGGGAGACGAGAGAGCCAAAACTTGAAATTACATGTCGGATACGGAAATCCCAGATTCCAATGTGTGCATGTGTGGATAAAACCGGTTGA | 750 | 0.468 | MESGESSECVASSGCHHHHRSSLRHHQNGVVSGVLRRSLTMVLELLKCSVCFDFMYSPIYHCHNGHTLCSSCKARVLNKCPSCRQQLGNIRCLALEKMAKSLELHCYHALWLQFKCRFLIADVNEEETCTWMVKIINCYGKYFCVHAEAFFQASTPICVVFLSLTGNHAEACNYSCSLEIGGNGRKLTFEGIPRSIRESERSLESADSLIVLGSMVHSLGGETREPKLEITCRIRKSQIPMCACVDKTG* | 250 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi15g0886 | 249 | SUPERFAMILY | RING/U-box | 42 | 88 | - | - | |
| Vvi15g0886 | 249 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 29 | 109 | - | - | |
| Vvi15g0886 | 249 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 107 | 234 | IPR008974 | GO:0005515 | |
| Vvi15g0886 | 249 | FunFam | Pectinesterase | 107 | 228 | - | - | |
| Vvi15g0886 | 249 | CDD | RING-HC_SIAHs | 46 | 84 | - | - | |
| Vvi15g0886 | 249 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 106 | IPR013083 | - | |
| Vvi15g0886 | 249 | Pfam | Seven in absentia protein family | 116 | 225 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
| Vvi15g0886 | 249 | SUPERFAMILY | TRAF domain-like | 98 | 233 | - | - | |
| Vvi15g0886 | 249 | ProSiteProfiles | Zinc finger RING-type profile. | 48 | 84 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi15g0886 | Vvi-Chr15 | 17375822 | 17379432 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi15g0886 | 42 | 238 | C3H Transcription Factor Family | AT2G41980 | 39.216 | 3.93e-53 | 172 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi15g0886 | K04506 | - | vvi:100250196 | 268.855 |