Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0882 ATGGAAGCCTCCGTCGATTTCCGGTGCAAAAAATCTGCCGGGAAATGGCGGTGCAGCGAGACGGCGTCGAAGGGGAAATCGTACTGTGAGAAGCACTGTTTGCAGATAAAGAATCAAAGCGAGAGGAAAAAGAGGGAGAGAGAAGAAGGAAAGATAAGCGGTTCTGGAGAATTCGCCGGTGGCGGTGGTGGAGAGAGGACCGGTGAGAAGAGGAGGAGGAGGAAAGAGTCCGACAGCGATGGATCAGATGACAATTCGACTCTGGTGAAAGACCTGCGCAAACGACACCCTATCACTAAAAAGGATAGAGTGAACCGGATTGTGGATATTAATTCAGATAAAATTGAGTCTAACTGCGGTAATGGAAAAGCGGAATCCGGCGGAGGACAGAGGAGTTCAACTGAAGACCAGAGCAAATCCGGTTCTAGAATATCTGAAAATGGGGTTCTTGGTGATAATAAGAAGAATAGTGGCAGTAATTGTAAGGGTGTAAGGAATTCTGGTCAGGACAAACTCAATAAGAACAAAGAGCATGGTAGCTTAATGTGTCATCAATGTCAGCGAAATGATAAGAGTGGTGTTGTTCACTGTTCCAGCTGTACAAGGAAACGCTACTGCTTTGAGTGCATTGCAAAATGGTACCCTGAAAAAACAAGAGATGAAATTGAGAGTGCATGCCCATTTTGTTGTGGCAATTGTAATTGCAAGGCTTGCCTGCGGGAGGTTTTGTTTGTGAAGGCTAATCATAAGGAATTAGATGACAGTGTCAAATTGCAGCGACTGCAGTACTTACTATTCAAAGCTCTGCCTGTTCTCAGGCATGTTCACCAGGAGCAGAAATCTGAAGTAGAGATAGAAGCCAAGATACGAGGTGTTCAATTGATGGAGAGTGATATAACAAGGTCTAAACTTGAGAAAAATGAACGATTATACTGTGATAATTGCAATACATCCATTGTTGATTTTCATAGAAGCTGCCCCAACCCTGATTGCTCTTATGATCTCTGTCTCATATGTTGTCGTGAGCTACGAGAAGGTCGTCAGCCTGGAGGAAGTGAAGCAGAAACATCCCACCAGCAGTTTGTAGAAAGAGCTCATGGGCAAGTCGCAGATGGGAAGAGCAAGGCTACAACTAAAAGAAAACGAAATGGTAGAGTGAGTGAAGTGGAGCTTGCTGCTGATGATTCTAAAGCTGATGTCTCCAATCAGTTTCCTGATTGGAGAGCAACTGGTGATGGTAGCATTCCATGCCCTCCAAAAGAGCGTGGAGGTTGTGGTACTGCAATACTGGAGTTGAGACGCAATTTCAAAGCTAATTGGGTAATGAAGTTGATTCAGAGTTCAGAGGATCTTATTTGCCATTATCAGTTACCAGATCATAATTTTTCTCAAGGTTGTTCTTTATGCTGGCCAAATGTTACTGGAAGGAACAGTGAACAAAATTCTGAAATGAGGAAGGCTGCTTTCAGGAAGCATGGTCATGACAACTTCTTGTTCTGCCCAAATGCTGTCAACATTACTGATGATGAAATTGAGCATTTCCAAAGGCATTGGATGAGAGGGGAACCTGTGATTGTCAGAAATGTTCTTGACAAGACATCTGGCCTTAGTTGGGAACCGATGGTAATGTGGAGGGCTTTTAGAGAAACAGGTGCAAAAACAAAGTTCAAAGAGGAGACACGGACTGTGAAGGCCATAGATTGCCTGGATTGGTGTGAGGTTGAGATTAATATTCATCAATTTTTTGCGGGCTACTTAGAGGGTCGTATGCATAAGGGTGGTTGGCCAGAGATGTTGAAGCTGAAAGATTGGCCCTCATCAACTCTATTCGAAGAGCGTTTGCCCAGGCATGGTGCTGAATTTATTGCAGCACTCCCATATTGTGACTATACTGATCCAAAATCAGGTTTTTTGAACATTGCTACAAAACTTCCTACTGAGTCCCTGAAACCCGATTTAGGACCCAAAACATATATTGCATATGGATTTCCTTTGGAGCTCGGTAGAGGAGATTCAGTGACAAAGCTGCATTGTGACATGTCTGATGCGGTTAATGTACTGACACATACTGCGAAGGTGAAGGTTGCCCCATGGCAGCATAAAAGAATAAAAACAATGCAGAAGAAACATGCTATTGGAGATTTGCATGAACTCTATGGTGGAATAAGTGAAGCTGTGGATGAAAGTGAGAACATAGTTGAGAAGGACCATTTGTTACCAGAACAGAAAAAGTCAAAGGTGAAGCCGTGTGATATAGCAAATCTTGTTACTGAGAATGGAGTTCAACATCACCCTACAAAGGATCAACTGGATGAAGATGTTAACAATGCAGACTCCAAGTCAAATGCAACTGGCAACATGAATGAGAAGCTAAAAGCAAAGGTAACAGCGCGATCTGAAAAGAGAGGATACCAGCCTTCGAATTGCAGGGATGATGCTGAGAGGGATTCCTCCTCAGGAAATGAGGTAGGTACAAGCTCCACTTGTCCTGCCACTGAAAATTTATATCATGCCAATGGACTTGAAGTTGAGAATGAAACTATGGCTGAAGAAGATGCATCCAATCAAGATGGCCTGAACTCTTCTAGTGACACAACTACAAACGATTCTCTTCAGAATATAGATGATTCAACTGTGGTCCATGGTGGTGCTGTTTGGGACATCTTTCGCAGGCAGGATGTTCCTAAGTTGATTGAGTACTTGCAAAAGCACCAAAAGGAATTTCACCACATAAATAATCTTCCTATAAAGTCTGTCATCCATCCTATTCATGATCAGACCCTTTTCTTGAATGAAAGGCATAAAAAACAACTGAAGGAAGAGTACAATGTTGAGCCCTGGACATTTGAGCAAAACCTTGGTGAGGCTGTTTTCATTCCAGCAGGGTGTCCTCATCAAGTGAGAAATAGACAATCATGCATCAAGGTGGCCCTTGACTTTGTATCCCCCGAGAATGTTCAAGAATGTATTCGGCTAACTGATGAGTTTCGTCTACTCCCAAAAAACCATAGAGCCAAGGAAGATAAATTGGAGGTTAAAAAAATGACCCTTTATGCTGTAAGTTCAGCTGTAAGAGAAGCTAAGAAAATCATCTCAAATCTCAAGTAA 3108 0.4279 MEASVDFRCKKSAGKWRCSETASKGKSYCEKHCLQIKNQSERKKREREEGKISGSGEFAGGGGGERTGEKRRRRKESDSDGSDDNSTLVKDLRKRHPITKKDRVNRIVDINSDKIESNCGNGKAESGGGQRSSTEDQSKSGSRISENGVLGDNKKNSGSNCKGVRNSGQDKLNKNKEHGSLMCHQCQRNDKSGVVHCSSCTRKRYCFECIAKWYPEKTRDEIESACPFCCGNCNCKACLREVLFVKANHKELDDSVKLQRLQYLLFKALPVLRHVHQEQKSEVEIEAKIRGVQLMESDITRSKLEKNERLYCDNCNTSIVDFHRSCPNPDCSYDLCLICCRELREGRQPGGSEAETSHQQFVERAHGQVADGKSKATTKRKRNGRVSEVELAADDSKADVSNQFPDWRATGDGSIPCPPKERGGCGTAILELRRNFKANWVMKLIQSSEDLICHYQLPDHNFSQGCSLCWPNVTGRNSEQNSEMRKAAFRKHGHDNFLFCPNAVNITDDEIEHFQRHWMRGEPVIVRNVLDKTSGLSWEPMVMWRAFRETGAKTKFKEETRTVKAIDCLDWCEVEINIHQFFAGYLEGRMHKGGWPEMLKLKDWPSSTLFEERLPRHGAEFIAALPYCDYTDPKSGFLNIATKLPTESLKPDLGPKTYIAYGFPLELGRGDSVTKLHCDMSDAVNVLTHTAKVKVAPWQHKRIKTMQKKHAIGDLHELYGGISEAVDESENIVEKDHLLPEQKKSKVKPCDIANLVTENGVQHHPTKDQLDEDVNNADSKSNATGNMNEKLKAKVTARSEKRGYQPSNCRDDAERDSSSGNEVGTSSTCPATENLYHANGLEVENETMAEEDASNQDGLNSSSDTTTNDSLQNIDDSTVVHGGAVWDIFRRQDVPKLIEYLQKHQKEFHHINNLPIKSVIHPIHDQTLFLNERHKKQLKEEYNVEPWTFEQNLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENVQECIRLTDEFRLLPKNHRAKEDKLEVKKMTLYAVSSAVREAKKIISNLK* 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0882 1035 MobiDBLite consensus disorder prediction 115 169 - -
Vvi15g0882 1035 FunFam Transcription factor jumonji (JmjC) domain-containing protein 497 750 - -
Vvi15g0882 1035 MobiDBLite consensus disorder prediction 819 834 - -
Vvi15g0882 1035 SMART cupin_9 614 997 IPR003347 -
Vvi15g0882 1035 ProSiteProfiles Zinc finger RING-type profile. 183 229 IPR001841 -
Vvi15g0882 1035 Gene3D Cupin 497 769 - -
Vvi15g0882 1035 Gene3D Cupin 827 1006 - -
Vvi15g0882 1035 Pfam WRC 6 44 IPR014977 -
Vvi15g0882 1035 MobiDBLite consensus disorder prediction 852 875 - -
Vvi15g0882 1035 MobiDBLite consensus disorder prediction 758 836 - -
Vvi15g0882 1035 FunFam Transcription factor jumonji (JmjC) domain-containing protein 824 1006 - -
Vvi15g0882 1035 ProSiteProfiles WRC domain profile. 3 47 IPR014977 -
Vvi15g0882 1035 MobiDBLite consensus disorder prediction 368 394 - -
Vvi15g0882 1035 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 21 1031 IPR045109 GO:0032454|GO:0033169
Vvi15g0882 1035 MobiDBLite consensus disorder prediction 39 97 - -
Vvi15g0882 1035 MobiDBLite consensus disorder prediction 39 53 - -
Vvi15g0882 1035 Pfam JmjC domain, hydroxylase 883 980 IPR003347 -
Vvi15g0882 1035 MobiDBLite consensus disorder prediction 793 818 - -
Vvi15g0882 1035 MobiDBLite consensus disorder prediction 848 875 - -
Vvi15g0882 1035 MobiDBLite consensus disorder prediction 64 95 - -
Vvi15g0882 1035 ProSiteProfiles JmjC domain profile. 633 997 IPR003347 -
Vvi15g0882 1035 MobiDBLite consensus disorder prediction 349 394 - -
Vvi15g0882 1035 SUPERFAMILY Clavaminate synthase-like 511 1028 - -
Vvi15g0882 1035 MobiDBLite consensus disorder prediction 115 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0882 Vvi-Chr15 17348763 17355632 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi15g0882 JmjC 5.8e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0882 K15601 - vvi:100258626 2092