Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0880 ATGGGTATGGGAGGAGGGGCTTGGACGGAGGAGGATAAAGCGATGGTGGCGGCTGTTTTGGGCACTCGAGCATTTGATTACTTGATGACCAGCTCCGTTGTGAGTGAGAATCTGTTAATGGCAGTGGGGAGTGATGAAAATTTGCAGACAAAGCTTTCGGATCTCGTAGACCGACCAAATGCATCCAATTTCAGTTGGAATTATGCAATTTTCTGGCAAATTTCACAGTCCAAGTCTGGGGATTGGGTGCTTGGATGGGGAGATGGGTCTTGTAGGGAGCCCAGGGAAGGGGAGGAATCCGAAGTGACCCGAATTTTAAATATTCGGCTCGAGGATGAAACCCAGCAGAGGATGAGGAAAAGGGTGCTTCAGAAGCTGCATACATTGTTTGGAGGCTCGGATGAGGACAGTTATGCTTTTGGATTGGACCGAGTCACTGATACTGAAATGTTTTTTCTCGCTTCCATGTACTTCTCATTTACCAGAGGAGAAGGTGGCCCAGGGAAATCTTTTGGATCTGGGAAGCATTTGTGGCTGTCTGATGCATTGAAATCTCCATCAGATTATTGTGTTCGATCATTCCTTGCCAAATCTGCTGGAATTCAGACCATTGTGTTAATCCCAACTGATGTTGGGGTTGTAGAGCTGGGTTCTGTGAGGTCATTACCTGAAAGCTTAGAGATGTTGCAGACTATAAGATCATCATTCTCGATGTATTTGCCATTCATCAGGGGCAAGCCAGCCTTACCAGTGTTGAACGAGAAGAAAAATGAAAGTGCCCCTTTTTCCAATCTGGGGACTGGGGAGCGAGTAGAGGGAATTCCAAAGATTTTTGGGCAGGATTTGAACTCAGGTCATTCCCATTTTAGGGAGAAACTTGCTGTTCGAAAGGCAGAAGAGAGGCCATGGGACAGCTACCAAAACGGGAACAGGCTTCCTTTTACGAACACTAGAAATGGTTTTCATGGTTCGGGCTGGCCACACATGCAGGGTGTGAAACCAGCAAGTACGGCAGAAATGTACAGTCCTCAGGTCCCAATCAATAATCTACATGAGATGGTTAATGGGGTTAGAGAGGAGTTTCGGCTTAGCCAGTTCCAGCCTCCCAAGCAGGTGCAGATGCAAATTGATTTTGCAGGGGCTGCTTCAAGGTCTACCTTGTTGGCTCGGCCAATTAGTGTGGAGTCTGAGCATTCAGATGTCGAGGCTTCATGCAAGGATGAGCGGCCAGGCCCAGCTGATGAAAGGAGGCCCCGGAAAAGGGGCAGAAAGCCTGCAAATGGAAGAGAAGAACCCCTCAATCATGTGGAAGCAGAGAGGCAGAGGCGTGAGAAACTGAACCAGCGGTTTTATGCATTGCGAGCTGTTGTGCCCAACATCTCCAAGATGGACAAAGCCTCCTTGCTGGGAGATGCAATTACTTACATCACCGAGCTCCAGAAGAAACTCAAGGACATGGAATCAGAGCGGGAGAAATTTGGGAGCACTTCAAGAGATGCATTATCTTTGGAAACTAACACCGAGGCAGAAACTCATATACAGGCGTCTGATGTCGATATCCAAGCAGCCAATGATGAAGTTATTGTGAGAGTAAGCTGCCCACTGGATACCCACCCTGTATCAAGAGTCATCCAAACATTCAAGGAGGCACAGATCACAGTGATCGAGTCGAAACTTGCTGCAGCCAATGATACTGTGTTCCATACTTTTGTAATCAAGTCCCAGGGATCCGAGCAGCTGATGAAGGAAAAGCTCACAGCTGCATTTTCGCGCGAATCCAATTCTTTACAGCCCTTGTCATCATCAGTTGGGTAA 1815 0.4766 MGMGGGAWTEEDKAMVAAVLGTRAFDYLMTSSVVSENLLMAVGSDENLQTKLSDLVDRPNASNFSWNYAIFWQISQSKSGDWVLGWGDGSCREPREGEESEVTRILNIRLEDETQQRMRKRVLQKLHTLFGGSDEDSYAFGLDRVTDTEMFFLASMYFSFTRGEGGPGKSFGSGKHLWLSDALKSPSDYCVRSFLAKSAGIQTIVLIPTDVGVVELGSVRSLPESLEMLQTIRSSFSMYLPFIRGKPALPVLNEKKNESAPFSNLGTGERVEGIPKIFGQDLNSGHSHFREKLAVRKAEERPWDSYQNGNRLPFTNTRNGFHGSGWPHMQGVKPASTAEMYSPQVPINNLHEMVNGVREEFRLSQFQPPKQVQMQIDFAGAASRSTLLARPISVESEHSDVEASCKDERPGPADERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITELQKKLKDMESEREKFGSTSRDALSLETNTEAETHIQASDVDIQAANDEVIVRVSCPLDTHPVSRVIQTFKEAQITVIESKLAAANDTVFHTFVIKSQGSEQLMKEKLTAAFSRESNSLQPLSSSVG* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0880 604 PANTHER MYC 34 588 IPR045084 GO:0003700|GO:0006355
Vvi15g0880 604 Gene3D - 423 495 IPR036638 GO:0046983
Vvi15g0880 604 FunFam Transcription factor bHLH13 423 497 - -
Vvi15g0880 604 MobiDBLite consensus disorder prediction 395 441 - -
Vvi15g0880 604 SMART finulus 436 485 IPR011598 GO:0046983
Vvi15g0880 604 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 430 479 IPR011598 GO:0046983
Vvi15g0880 604 MobiDBLite consensus disorder prediction 394 441 - -
Vvi15g0880 604 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 48 236 IPR025610 -
Vvi15g0880 604 Coils Coil 476 496 - -
Vvi15g0880 604 CDD bHLH_AtAIB_like 427 502 - -
Vvi15g0880 604 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 433 492 IPR036638 GO:0046983
Vvi15g0880 604 Pfam Helix-loop-helix DNA-binding domain 434 480 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0880 Vvi-Chr15 17338979 17340793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0880 1 602 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 53.052 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi15g0880 bHLH-MYC_N 1e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0880 - - vvi:100233036 1184.09