Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0879 ATGGAGCAGGAGCAGGAGCTGCAGCTGCAGCTGCAGCCACCATGCACTGAAGATGACCAAGCAACGTCGTTTGGAGCCGTCGGAGAAACTCGCCGGAATCCTGATGCCGAACGTGGTGGAACCAGACACCCTGTTTACAGAGGCGTCCGAAAGCGTCGGTGGGGCAAATGGGTGTCGGAGATTCGAGAACCGCGGAAGAAGTCGCGGATATGGCTCGGGTCCTTTCCCGTGCCGGAAATGGCAGCGCGTGCCTATGATGTCGCGGCGTATCATCTCAAAGGACGCAAAGCGCAGCTCAATTTTCCCGACGAGGTCGAGCTGCTTCCTCGGCCGTCGTCGTGCACCGCTAGAGATATTCAGGCGGCTGCTGCCGAGGCGGCGAATGCTGTGATATCGACTAAGAAAAGCGGGACAGACGGCTCTGACGGCGACTGCAATGGCGACGATTTCTGGGGTGAGATTGAGTTGCCGGAGCTGATGGATGGCGGGAAAGAGCTTTGGACGGACACAGTGACGGAATTCTCGCCGGAGTCGTGTTATTCGAATGATTGTGCATGGGAGTTCTCCGGTGATGCCACGTGGACGGATGGGGATTCTCATCAGCAATACATGGTTAGCCTCTAA 624 0.5737 MEQEQELQLQLQPPCTEDDQATSFGAVGETRRNPDAERGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAARAYDVAAYHLKGRKAQLNFPDEVELLPRPSSCTARDIQAAAAEAANAVISTKKSGTDGSDGDCNGDDFWGEIELPELMDGGKELWTDTVTEFSPESCYSNDCAWEFSGDATWTDGDSHQQYMVSL* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0879 207 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Vvi15g0879 207 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Vvi15g0879 207 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vvi15g0879 207 PRINTS Ethylene responsive element binding protein signature 84 104 IPR001471 GO:0003700|GO:0006355
Vvi15g0879 207 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Vvi15g0879 207 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Vvi15g0879 207 SUPERFAMILY DNA-binding domain 45 104 IPR016177 GO:0003677
Vvi15g0879 207 MobiDBLite consensus disorder prediction 1 44 - -
Vvi15g0879 207 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Vvi15g0879 207 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Vvi15g0879 207 MobiDBLite consensus disorder prediction 1 19 - -
Vvi15g0879 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 32 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0879 Vvi-Chr15 17321861 17322484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0879 5 207 AP2-EREBP Transcription Factor Family AT1G01250 57.282 1.46e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi15g0879 AP2 7.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0879 K09286 - vvi:100248368 422.935