Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0877 ATGGCGCATGGGAATAATATCAGAGGCGGTCTCGAGCCAGGTTTGGAAAGCGATCATCTGTTTACGGAGCTATGGAGGGCATGTGCTGGTCCTTTGGTTGATGTTCCTAAGCCTCATGAGAGAGTTTTCTACTTCCCCCAAGGTCACATGGAACAATTACAAGCCTCTACGAATCAGGGGGTGGATCAGAGGATTCCATTGTTCAATCTTCCTTCAAAGATCCTTTGTCGTGTTGTTCACACCCGGTTACTGGCAGAACAAGAAACAGACGAAGTTTATGCACAGATCACTTTACAGCCAGAAGCAGATCAAACAGAGCCTAAGAGTCCTGATTCATGCCCTGATGAGGCTCCAAAACAAACCGTTCATTCATTTTGCAAGATTTTAACGGCCTCTGATACAAGCACACATGGGGGGTTTTCTGTTCTCCGTAAGCATGCCAATGAATGCTTGCCTCCATTGGATATGAGCCAAGCAACCCCAACTCAGGAATTAGTTGCTAGAGATCTACATGGATATGAGTGGCGATTTAAGCATATATTTAGAGGTCAACCCCGGAGACATTTGCTTACAACAGGATGGAGTACTTTTGTCACTTCAAAGAGGCTAGTTGCTGGGGATGCCTTTGTGTTTCTGAGAGGTGATAATGGAGAGTTGCGAGTTGGGGTTCGCCGTCTTGCTCGTCAACAGAGCCCCATGCCCTCATCTGTCATATCAAGCCAGAGCATGCATCTAGGAGTGCTTGCTACTGCATCTCATGCTGTTACCACCCAGACCCTCTTTGTTGTTTACTACAAGCCAAGGACAAGCCAATTCATTATTAGCTTAAACAAATACTTGGAAGCAGTTAACTATGGCTTTGCAGTTGGCATGCGCTTCAAAATGAGATTTGAGGGAGAAGATTCTCCTGAAAGAAGGTTCACAGGCACCATAGTTGGAATTGGAGATATTTCTCCACAGTGGTCAAATTCTAAATGGCGTTCATTGAAGATTCAATGGGATGAACCTGCAACAATTCAAAGACCTGAGAGGGTTTCTTCATGGGATATAGAGCCTTTTGTAGCTTCTGCTTCATTAAACCTTACTCAACCACCAGTAAAGATCAAGAGGCCCAGACCTCTTGATCTTCCAGTTGCTGAAAATACTTCCAGTTCAGTTCCTTCCCCTTTCTGGTATGCTGGATCATCCCCATCTCATGAATTAACCCAGTTAGGTGGTGTGACTGAAGTCCAAAGCAGTGAAAGCCAGGTACACTGGCCTCCGAAGCCAAAAGAAATTAATGGCAATGTCATCCACAACAGCAACTGTGGCAGCTCCATCGGGCGGCCCGAAGGCATATGGTCTTCTTCTCCTTCAGTGAACGTCTCTTTAAACCTGTTCCAGGACCTAACAGAAGACAGCAAAACTGTGTCAACACGATCTATTCTATCTGGCTATAACACTTCTTTGTCATCAAGGCCTAACAATGGCCTAATATCTGATCAGGTTGAAAAAGGGAAACGAATTGAAGCTTCTATTGGCTGCCGGTTGTTTGGGATTGATCTGACAAACAACTCTAAGGCCACTGCTCTTCTGGAGATGTCATGTCCAAGCATCACATCCAGCAGTGTCAAGGGACCCATTTCAGCTGTTGTTTCTGAAGCTGATAGGATCCAGAATTTGGATGTGTCGAAATCCTCGAATGAGCAAAAACAAGTTGTACCAGAGGCATCTCAAAAGGAGACACAGGGCAGGCAGAGTTGCACTCCTTCCTCAAGGACACGTACTAAGGTGCAAATGCAAGGAGTAGCAGTTGGTCGTGCTGTTGACTTGACTGCATTGGAAGGATATGATGAGCTTATAAGTGAGCTGGAGAAAATGTTCGAGATCAAAGGAGAGCTTTGCCCTCGGAATAAATGGGAAGTGGTTTTCACTGATGATGAAGGAGATATGATGCTTGTGGGTGATGATCCATGGCAGGAATTCTGTAAGATGGTGAGAAAGATCTTCATATATTCTAGCGAGGAAGTAAAAAAGATGAGTCCAAGATGCAAGCTTTCTACGTCATCTTTAGATGGTGAAGGAACAGTTATAAGCTTGGATTCAGAGTTAAGAACTGAACCATAG 2106 0.4482 MAHGNNIRGGLEPGLESDHLFTELWRACAGPLVDVPKPHERVFYFPQGHMEQLQASTNQGVDQRIPLFNLPSKILCRVVHTRLLAEQETDEVYAQITLQPEADQTEPKSPDSCPDEAPKQTVHSFCKILTASDTSTHGGFSVLRKHANECLPPLDMSQATPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVTTQTLFVVYYKPRTSQFIISLNKYLEAVNYGFAVGMRFKMRFEGEDSPERRFTGTIVGIGDISPQWSNSKWRSLKIQWDEPATIQRPERVSSWDIEPFVASASLNLTQPPVKIKRPRPLDLPVAENTSSSVPSPFWYAGSSPSHELTQLGGVTEVQSSESQVHWPPKPKEINGNVIHNSNCGSSIGRPEGIWSSSPSVNVSLNLFQDLTEDSKTVSTRSILSGYNTSLSSRPNNGLISDQVEKGKRIEASIGCRLFGIDLTNNSKATALLEMSCPSITSSSVKGPISAVVSEADRIQNLDVSKSSNEQKQVVPEASQKETQGRQSCTPSSRTRTKVQMQGVAVGRAVDLTALEGYDELISELEKMFEIKGELCPRNKWEVVFTDDEGDMMLVGDDPWQEFCKMVRKIFIYSSEEVKKMSPRCKLSTSSLDGEGTVISLDSELRTEP* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0877 701 CDD B3_DNA 123 225 IPR003340 GO:0003677
Vvi15g0877 701 Pfam B3 DNA binding domain 125 225 IPR003340 GO:0003677
Vvi15g0877 701 FunFam Auxin response factor 286 357 - -
Vvi15g0877 701 SMART B3_2 125 227 IPR003340 GO:0003677
Vvi15g0877 701 Pfam Auxin response factor 251 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi15g0877 701 FunFam Auxin response factor 123 227 - -
Vvi15g0877 701 Gene3D - 122 226 IPR015300 -
Vvi15g0877 701 Pfam AUX/IAA family 632 676 IPR033389 -
Vvi15g0877 701 Pfam AUX/IAA family 561 622 IPR033389 -
Vvi15g0877 701 SUPERFAMILY CAD & PB1 domains 581 662 - -
Vvi15g0877 701 MobiDBLite consensus disorder prediction 556 588 - -
Vvi15g0877 701 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
Vvi15g0877 701 MobiDBLite consensus disorder prediction 99 118 - -
Vvi15g0877 701 Gene3D - 582 674 - -
Vvi15g0877 701 Gene3D - 287 359 - -
Vvi15g0877 701 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Vvi15g0877 701 FunFam Auxin response factor 581 674 - -
Vvi15g0877 701 ProSiteProfiles PB1 domain profile. 586 678 IPR000270 GO:0005515
Vvi15g0877 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 674 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0877 Vvi-Chr15 17300697 17304595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0877 7 699 B3 DNA Binding Superfamily AT2G46530 55.396 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi15g0877 B3 4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0877 K14486 - vvi:100265555 1398.26