Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0872 ATGGAGACGTCAAACATGGCTGCCCAAGTTCCACCCCGAGCCAGGACCCATCAGCCTTGCGCTGCTTGCAGGATGCTGAGGAGGAGGTGTGATAGAGACTGTATATTGGCACCCTACTTTCCAAGCTATGAGATTGAGAAATTCGCTGGTGTGCATAAAGTGTTTGGTGCTAGCAATGTTATCAAAATGATTCAGATGGTGGAGGAATCGAGGAGGGAGGATGCTGTCAAAGCCATAATTTATGAAGCAACAACAAGGCTTAGAGACCCGGTCTACGGCAGTGCTGGAGCAATTTTCCACTTGCAGAAAATGATTCAAGACCTCAATACACAACTGGACTCGATAAGAACTCAAACCCTGGTGCTTCGAGAACAAAGAGATCAGCTGTTAGGGATTCTAAAAAATGTTCATCGCAGGGATCCAGTTTCTCCCATTGATTTCCCCACGTTTGGTGATGCTGGTTCCTTATCCATTGATGATACAGTGGGCTGCGGTCCTTCCTCATTTCCCTCAGACTGTGACTGGATTCTGTGA 534 0.4719 METSNMAAQVPPRARTHQPCAACRMLRRRCDRDCILAPYFPSYEIEKFAGVHKVFGASNVIKMIQMVEESRREDAVKAIIYEATTRLRDPVYGSAGAIFHLQKMIQDLNTQLDSIRTQTLVLREQRDQLLGILKNVHRRDPVSPIDFPTFGDAGSLSIDDTVGCGPSSFPSDCDWIL* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0872 177 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
Vvi15g0872 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 124 - -
Vvi15g0872 177 Pfam Lateral organ boundaries (LOB) domain 19 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0872 Vvi-Chr15 17260167 17260791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0872 19 139 AS2 family AT1G07900 49.587 5.83e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi15g0872 LOB 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0872 - - vvi:100251985 350.517