Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0871 ATGGAGACATCGACTATGGCTGCCCAAGTTCCACCCCGAGCCAGGACCCATCAGCCTTGCGCTGCTTGTAGGATGCTGAGGAGGAGGTGTGATAGAGACTGCATATTAGCACCATACTTTCCAAGCTATGAGGCTGAGAAATTCGCTGGTGTGCATAGAGTGTTTGGTGCTAGCAATGTTATCAGAATGATTCAGATGGTGGAGGAATCGAGGAGGGAGGATGCTGTCAAAGCCATAATTTATGAAGCAACAGCAAGGCTTAGAGACCCTGTGTATGGCAGTGCTGGAGCAATTTTCCACTTGCAGAAGATGATTCAAGACCTCAAAACACAACTGGACTCGATAAGAACTCAAACACTGGTGCTTCAAGAACAAAGAGATCAGTTGTTAGGGATTCTAAAAAATGTTCATCACATGGATCCAGTTTCCCCCATGGATTTCCCCATGTTTGGCGCTGCTGGTTCCTTATCCAATGGTGATATATTGCGCTATGATCCTTCTACATTTCCCTTAGACTGTGACTGGACTTGGTGA 534 0.4625 METSTMAAQVPPRARTHQPCAACRMLRRRCDRDCILAPYFPSYEAEKFAGVHRVFGASNVIRMIQMVEESRREDAVKAIIYEATARLRDPVYGSAGAIFHLQKMIQDLKTQLDSIRTQTLVLQEQRDQLLGILKNVHHMDPVSPMDFPMFGAAGSLSNGDILRYDPSTFPLDCDWTW* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0871 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 125 - -
Vvi15g0871 177 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
Vvi15g0871 177 Pfam Lateral organ boundaries (LOB) domain 19 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0871 Vvi-Chr15 17253530 17254158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0871 19 166 AS2 family AT1G07900 45.455 2.91e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi15g0871 LOB 6.6e-38 No_clan