Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0864 ATGATGGGGAGTTTGAGTGAAGAAGAGGATCAATTCTTTGACACTCGGGAAGACATAACTTCGGTGTCCGATTCTGGCTCGGATTGCCAGGAGAATCTCGATTCTGAGTGGAGGAACACTGATTTTGTATCTGGCAGTTTCGGGTGTGAGGTTTGGATTAAGAACCCAGAAAGCATTCGGGAAAGACGTACTAAGTTCCTAAAATGGATGGGATTGGGGGTAGATCATGTGGTGCGTGAAGTCCCTGAAGAATTGGTTTCTGGGGAATTGAAGGGCGAGATTGATAGAATTACAGAAAACAGTGGGGCTGTTCTAGGAATGTCGAGTTCTGATGATGGGTTTTCATCGAGTCAGTCTTCTATGTGCTGGCCTAGTGATGCTCAAGATTTCTTGGGTGGGTCATTGGAGGAGAATTTGTTCTGTAGAATTAGGAGTTTGGATGATGGGAGGGAGTTTATTGTAGATGAACTGGGGCAGTACGGCATGCTGAGTAGACTCCGTGAAGTTGGTTCAAACCGGGTGGTTACTATTGAAGAGTTTGAGAGAACTCTTGGACTGTCCCCTCTGGTACAGAAAATGATGCGAAAAGAAGCTGAAAAGGCTTGCAATCCTGTGGAGGCAGCAAAGCGTTGCAGGAGGGGGTGGTGGAGGAGATTAGGCGCTGTGGCCTGCATTGCGAATTGTCCAATTGAAGTTGGTAAATTTAAGCCAAATGGTCCATATCCCATTCTTGGGACCAAGTCTCAAACGGTTAAAGTTCGTCCTTACAGGAGGCGATCCAAGGAATTATCAGCTCTTTATATGGGGCAAGATTTTGTGGCTCATGAGGGTTCAATCCTAACAATGAAGTTCAGTCCTGATGGGCAGTACCTGGGGAGTGCTGGTGAAGATAGAGTTGTACGTGTATGGCTGGTGACAGAGTCAGAGAGATCAGATGGGTTTGACGCTCCAGATGTTGATTGTTCATATGCATACTTCACAGTAAATCATCTTTCTGAATTAGTCCCCATCCATGCAGATAAAGAGAAAAAGGGTAAACTAAAAACTTTGAGGAAATCATTAGATGCAGCCTGTGTCATTTTTCCTCAGAAAGTTTTTCAGATATTGGAGAAACCACTCCATGAATTCCATGGGCACTGTGGTGAGGTCCTGGATATCTCGTGGTCTAAGAATAAGTATCTTCTGTCGTCCTCCGTTGATAAAACTGTTCGCCTGTGGCAAGTGGGATGTAACCAATGCCTTAAAGTTTTTTCCCACAATAATTATGTTACATGTGTTCAGTTCAATCCTGTGGATGATAATTACTTCATAAGTGGTTCCATAGATGGAAAAGTACGCATCTGGGAAATCCCTGGTGGTCAAGTTGTTGATTGGACTGATATAACAGAAATAGTCACAGCCGTGTGTTATCGCCCTGATGGAAAGGGCGTAATAGTTGGCTCCATGACTGGCAATTGTCGCTTTTATGATGCATCGGATGATCGTCTACAACTGCATGCTCTAATATGCTTACAGGGTAAGAAGAAGTCCTCATTCAAGAGGATAACAGGCTTTCAGTTTTCTCCAAGCGACCCAAGCAAATTAATGGTCACATCTGCAGATTCACAAGTTAGAATCCTAGATGGGGTTGATGTGATCTGCAAATACCGAGGCCTCCGTAATGCAGGAAGTCAGATATCTGCATCATTCACCTCAGATGGAATGCACATAGTTTCAGCAAGTGAGGATTCTAATGTCTATGTGTGGAACTGCATCAGCCAGGATGTACCAGTGCATTCTCAAGCAAAGAACAATTGGTCTTGTGAGCGCTTCTTCTCAAACAATGCTTCAGTTGCCATACCTTGGTGTGGGGCAACATGTGGAAACTCTATTTTCTCAAATATATCTGGAGCATTTCCATCTCCTAAGCTTTCTGTAAACCTGCCTAGGTCTGACCCAGAAAATAAACCACATCAATGCCACTTGGGTGAGAGCTCAAGTACCATATTGCCATTTTCTTCCCCTGATCATTTCTCTGTGGGCCATGGATTTTTCTCAGAGTCTTTGCCCAAGGGATCTGCAACCTGGCCAGAGGAGAAGCTTCTCACTCCCAGCTCACTGGTTGTATCATCTGCAATGTGCAAATCTCAATACAAGTTTCTGAAAACATCTTGCCAGAGCATGTTTGGTTCTCCTCATGCATGGGGATTAGTGATTGTAACAGCTGGCTGGGATGGGAGGATTAGGTCATTCCAGAATTATGGACTACCAATTCGTAAGTAA 2262 0.443 MMGSLSEEEDQFFDTREDITSVSDSGSDCQENLDSEWRNTDFVSGSFGCEVWIKNPESIRERRTKFLKWMGLGVDHVVREVPEELVSGELKGEIDRITENSGAVLGMSSSDDGFSSSQSSMCWPSDAQDFLGGSLEENLFCRIRSLDDGREFIVDELGQYGMLSRLREVGSNRVVTIEEFERTLGLSPLVQKMMRKEAEKACNPVEAAKRCRRGWWRRLGAVACIANCPIEVGKFKPNGPYPILGTKSQTVKVRPYRRRSKELSALYMGQDFVAHEGSILTMKFSPDGQYLGSAGEDRVVRVWLVTESERSDGFDAPDVDCSYAYFTVNHLSELVPIHADKEKKGKLKTLRKSLDAACVIFPQKVFQILEKPLHEFHGHCGEVLDISWSKNKYLLSSSVDKTVRLWQVGCNQCLKVFSHNNYVTCVQFNPVDDNYFISGSIDGKVRIWEIPGGQVVDWTDITEIVTAVCYRPDGKGVIVGSMTGNCRFYDASDDRLQLHALICLQGKKKSSFKRITGFQFSPSDPSKLMVTSADSQVRILDGVDVICKYRGLRNAGSQISASFTSDGMHIVSASEDSNVYVWNCISQDVPVHSQAKNNWSCERFFSNNASVAIPWCGATCGNSIFSNISGAFPSPKLSVNLPRSDPENKPHQCHLGESSSTILPFSSPDHFSVGHGFFSESLPKGSATWPEEKLLTPSSLVVSSAMCKSQYKFLKTSCQSMFGSPHAWGLVIVTAGWDGRIRSFQNYGLPIRK* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0864 753 Pfam WD domain, G-beta repeat 371 406 IPR001680 GO:0005515
Vvi15g0864 753 Pfam WD domain, G-beta repeat 412 448 IPR001680 GO:0005515
Vvi15g0864 753 Pfam WD domain, G-beta repeat 272 303 IPR001680 GO:0005515
Vvi15g0864 753 ProSiteProfiles Trp-Asp (WD) repeats profile. 560 583 IPR001680 GO:0005515
Vvi15g0864 753 Gene3D - 220 613 IPR015943 GO:0005515
Vvi15g0864 753 SMART WD40_4 265 304 IPR001680 GO:0005515
Vvi15g0864 753 SMART WD40_4 410 449 IPR001680 GO:0005515
Vvi15g0864 753 SMART WD40_4 451 490 IPR001680 GO:0005515
Vvi15g0864 753 SMART WD40_4 505 541 IPR001680 GO:0005515
Vvi15g0864 753 SMART WD40_4 542 583 IPR001680 GO:0005515
Vvi15g0864 753 SMART WD40_4 369 407 IPR001680 GO:0005515
Vvi15g0864 753 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 450 - -
Vvi15g0864 753 MobiDBLite consensus disorder prediction 1 31 - -
Vvi15g0864 753 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 303 - -
Vvi15g0864 753 SUPERFAMILY WD40 repeat-like 271 744 IPR036322 GO:0005515
Vvi15g0864 753 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 416 IPR001680 GO:0005515
Vvi15g0864 753 SUPERFAMILY WD40 repeat-like 114 309 IPR036322 GO:0005515
Vvi15g0864 753 PRINTS G protein beta WD-40 repeat signature 436 450 IPR020472 -
Vvi15g0864 753 PRINTS G protein beta WD-40 repeat signature 394 408 IPR020472 -
Vvi15g0864 753 PRINTS G protein beta WD-40 repeat signature 570 584 IPR020472 -
Vvi15g0864 753 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 303 IPR001680 GO:0005515
Vvi15g0864 753 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 376 408 - -
Vvi15g0864 753 PANTHER WD REPEAT DOMAIN 44 6 750 IPR040324 -
Vvi15g0864 753 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 450 IPR001680 GO:0005515
Vvi15g0864 753 CDD WD40 275 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0864 Vvi-Chr15 17203443 17207578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0864 354 585 U-box Gene Family AT2G33340 26.667 5.33e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0864 - - vvi:100241604 1534.62