Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0858 ATGAATTTTAGGCATGGTTTGGTAATGCAAGGGGCTGAGGACGAGGACGAGGCCGCCTATGTCGAGAAAGATCCCACTGGTCGATATGTTCGGTTCAAAGAAATATTGGGCAAGGGCGCATTCAAGACTGTCTATAAGGCATTTGACGAAGTTGATGGAATAGAAATCGCTTGGAACCAAGTGAAGATTGACGATGTCTTGCGGTCACCAGAAGATTTGGAAAAACTATATTCTGAAGTTCATCTCCTGAAATCATTAAAACATGAAAATATTATCAAATTCTATAATTCCTGGGTGGATGATAAGAAGAAGACTGTTAACATGATTACTGAGCTCTTCACGTCTGGGAGTCTAAGGCAATATCGAAAGAAGCACAAAAATGTTGATATGAAGGCTATAAAGAATTGGGCAAGGCAGGTTCTTCGAGGTTTGGTGTATCTTCACAGTCACAACCCACCAATTATTCATAGAGACTTAAAATGTGACAATATATTTGTCAATGGAAATCATGGGGAAGTTAAAATTGGAGACCTCGGACTGGCAATTGTTATGCAGCAGCCTACTGCTCGAAGTGTTATTGGGACTCCCGAGTTCATGGCTCCAGAGCTTTATGAAGAAGAATATAACGAACTTGTCGACATATATTCTTTTGGGATGTGCATGTTGGAGATGGTTACTTTTGAGTATCCATATAATGAATGCAAAAATCCGGCTCAAATCTATAAGAAGGTTACCTCTGGCATCAAACCTGCTTCTCTTTGTAAGGTGACGGATCTCCAAATTAAGGAGTTCATTGTGAAATGTCTGGCTCCAGCATCTGAAAGATTACCTGCAAAGGAGCTTCTCAAAGATCCATTCTTTCAATCTGAGAATCCAAAGGAGCCGATCCGTGTCCCTTTGCAGTTACCTTCCCGAAGTCCCAAATCAATAATTCTATCCAAATCTGGGCCTTTCTCCATGGACATAGATCCTGACCATCCACAACTTTCTTCAAGCACAAGTACAGAAAACAATGGAAGTCCAGATTTTCCAGTCTTGGAATTTCAGAGGATGTACAAAAGCAGTGAATTTAGATTGAGGGCAAAGAAAATTAATGATAACTCAATATCATTAACTTTGCGTACTGTTGACTCGTATGGTCCAGTGAAGAATATTCATTTTCCCTTTTCACTTGATACTGACACTGTACACTCTGTAGTGGGTGAGATGGTTGAACAACTGGAGTTAGCAGAACATGAGGTGGCCTTCATAGCTGATTTTATTGATTACGTGATAATGAGACTTCTGCCCGGTTGGAAGCCTCCACGTGATGATCCCTTAGGTGGAGCAAGGAGTCCAAATGCAGAGCCTCCAGTACTTGGAAATGGTAACAACCATGATTGTACTATTTCCCATGGTGATGGTAATTCTTCTCCAAATTTGGCTAATGCAGAAGATCAGGATTCATTGGCATCTGCTGGTTTGGTGACCCTGACTGTAGATGCTTCCAAAAAAAATGATAAAACGGTGGGATTTGGAGATTACAATATTGGTGGCAACTATAAAGGTTCAAATGGTGGGCATGCCTCTGAACAGGAGTCTAGGGATCCATACCATGAAGACTACAAATTGCAAAGAAATAATAGCAGTATTGAGGAATTTACCCCAATGAACAAATTCCAGAAGAGCACGGTATTGTCTTTCGATGATTTAAGTGGACTTTCTAATGTTAGGAGCTTGACTTGTAGTTGCTCATCTCTGTCTCTAGCAGACATAGATCAGGATCCTGGGCTAAAGCAGGAGCTTGATGCTATTGACTTACAGTATCAGCATTGGTTTCAAGAGCTTTCTAGGATGAGAGTAGAGGCATTAGAGGCCACTAAGAAGAGATGGATGACAAAGAAGAAGCTGGCTGTTCAATGA 1902 0.4101 MNFRHGLVMQGAEDEDEAAYVEKDPTGRYVRFKEILGKGAFKTVYKAFDEVDGIEIAWNQVKIDDVLRSPEDLEKLYSEVHLLKSLKHENIIKFYNSWVDDKKKTVNMITELFTSGSLRQYRKKHKNVDMKAIKNWARQVLRGLVYLHSHNPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCMLEMVTFEYPYNECKNPAQIYKKVTSGIKPASLCKVTDLQIKEFIVKCLAPASERLPAKELLKDPFFQSENPKEPIRVPLQLPSRSPKSIILSKSGPFSMDIDPDHPQLSSSTSTENNGSPDFPVLEFQRMYKSSEFRLRAKKINDNSISLTLRTVDSYGPVKNIHFPFSLDTDTVHSVVGEMVEQLELAEHEVAFIADFIDYVIMRLLPGWKPPRDDPLGGARSPNAEPPVLGNGNNHDCTISHGDGNSSPNLANAEDQDSLASAGLVTLTVDASKKNDKTVGFGDYNIGGNYKGSNGGHASEQESRDPYHEDYKLQRNNSSIEEFTPMNKFQKSTVLSFDDLSGLSNVRSLTCSCSSLSLADIDQDPGLKQELDAIDLQYQHWFQELSRMRVEALEATKKRWMTKKKLAVQ* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0858 633 Gene3D Phosphorylase Kinase; domain 1 13 111 - -
Vvi15g0858 633 Gene3D - 367 429 - -
Vvi15g0858 633 Coils Coil 627 633 - -
Vvi15g0858 633 Pfam Protein kinase domain 32 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0858 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Vvi15g0858 633 FunFam Probable serine/threonine-protein kinase WNK1 14 111 - -
Vvi15g0858 633 ProSiteProfiles Protein kinase domain profile. 30 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0858 633 MobiDBLite consensus disorder prediction 437 477 - -
Vvi15g0858 633 SMART serkin_6 30 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0858 633 MobiDBLite consensus disorder prediction 457 477 - -
Vvi15g0858 633 Gene3D Transferase(Phosphotransferase) domain 1 113 293 - -
Vvi15g0858 633 SUPERFAMILY Protein kinase-like (PK-like) 31 338 IPR011009 -
Vvi15g0858 633 CDD STKc_WNK 28 287 - -
Vvi15g0858 633 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 535 - -
Vvi15g0858 633 FunFam probable serine/threonine-protein kinase WNK9 113 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0858 Vvi-Chr15 17151711 17154829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0858 16 632 MAP Kinase Kinase Kinase AT5G41990 49.516 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vvi15g0858 Pkinase 7.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0858 K08867 - vvi:100248376 1276.92