Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0854 ATGCTTAGCAATGACATCTCAGACCTGAACCTTGGATTTAAACCTTTAATATGCTATCCTCTTGATTTAGTTCATCATGCAAGGCCTCTACGGCCTTATGGTCATGCAAGGCCTCTACTAATGATCATCCAAGGCCTCTACTTCTTTTGCGCATCAGCCCTTCACATATCTTCAGGGTTTGCTTTTGTTTATTTTGAGGATGAGCATGATGCTGATGATGCGATCCGAGGTCTTGACAATATCCCATTTGGTTATGACAGGCGCAGGCTGTCTGTGGAGTGGGCCAAGGGTGAACGTGGCCGTCATCGGGAGGGTTCTAGGTCAATGGCAAACCAGAGACCCACTAAAACATTGTTTGTTATAAACTTTGATCCGATTCGGACAAGGATACGTGATATCGAAAGACATTTTGAACCTTATGGGAAGGTTCTTCATGTTCGAATTCGACGGAACTTTGCATTTGTGCAGTATGAGACACAGGAAGATGCCACCAAAGCTCTTGAGTGTACACACATGAGCAAGATATTAGACAGGGTGGTGTCTGTTGAGTATGCTTTGAGGGATGACAGTGATAAATATGACAGCCCTAGGAGAGGAGGTTACAGTAGGCGTGGGGAAAGTCCTTATGGGCGATCGCCTAGTCCAGTGAATCGCAGGGGTCGACCAAGCCCTGATTATGGTCGAGCACAGAGCCCAGTCTATGATAGGTACAATGGTCCAGCATATGAACGTAACAGGAGCCCTGAATATGGCAGATATCGCAGCCGATCACCTGTTCGGAGATCAAGAACATGA 795 0.4642 MLSNDISDLNLGFKPLICYPLDLVHHARPLRPYGHARPLLMIIQGLYFFCASALHISSGFAFVYFEDEHDADDAIRGLDNIPFGYDRRRLSVEWAKGERGRHREGSRSMANQRPTKTLFVINFDPIRTRIRDIERHFEPYGKVLHVRIRRNFAFVQYETQEDATKALECTHMSKILDRVVSVEYALRDDSDKYDSPRRGGYSRRGESPYGRSPSPVNRRGRPSPDYGRAQSPVYDRYNGPAYERNRSPEYGRYRSRSPVRRSRT* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0854 264 SMART rrm1_1 117 183 IPR000504 GO:0003723
Vvi15g0854 264 FunFam Serine/arginine-rich splicing factor RS31 108 197 - -
Vvi15g0854 264 SUPERFAMILY RNA-binding domain, RBD 56 190 IPR035979 GO:0003676
Vvi15g0854 264 MobiDBLite consensus disorder prediction 190 264 - -
Vvi15g0854 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 187 IPR000504 GO:0003723
Vvi15g0854 264 Gene3D - 111 196 IPR012677 -
Vvi15g0854 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 180 IPR000504 GO:0003723
Vvi15g0854 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 83 IPR000504 GO:0003723
Vvi15g0854 264 CDD RRM2_AtRSp31_like 117 186 - -
Vvi15g0854 264 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 55 130 - -
Vvi15g0854 264 Gene3D - 52 110 IPR012677 -
Vvi15g0854 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0854 Vvi-Chr15 17141399 17142656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0854 57 192 Eukaryotic Initiation Factors Gene Family AT1G49760 25.676 1.66e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0854 K12893 - vvi:100255266 399.053