Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0853 ATGGAAGAAAATCCGTTTCCTGCATGGTCTTGGTCTGTGGAGCAGTGTCTGAAAGAATACAATGTGAGAATAGATAAGGGCCTGAGCAGCTATGAGGTTGAGAAACGGCGTGAGAGGTACGGTTGGAACGAACTCACCAAAGAAAAAGGGAAGCCGCTATGGCGTCTTGTATTGGAACAGTTTGATGATATGCTTGTAAAAATCCTTCTAGTCGCTGCTTTCATATCCTTCATTCTTGCTTACTTGCATGGAGATGAATGTGAGGAATTGGGATTTGAGGCCTATGTGGAACCCTTTGTGATTGTGCTGATTTTGGTGTTGAATGCCATTGTTGGAGTAATTCAGGAGACCAATGCTGAAAAGGCACTTGAAGCCCTTAAGGAGATGCAATGTGAATCTGGGAAGGTTTTAAGGGATGGATATTTCGTGCCAGATTTGCCAGCACGGGAACTTGTCCCTGGTGATATCGTAGAGTTGCGTGTTGGTGACAAAGTCCCTGCTGATATGAGAGTTGCAGCTTTGAAAACCTCAACCCTGAGAGTAGAACAGAGTTCATTAACGGGAGAGGCGATGCCTGTTCTGAAAGGCACTAGTCCAATATTCATGGATGATTGTGAGTTGCAGGCTAAAGAAAATATGGTTTTTGCAGGGACAACAGTTGTTAATGGAAGCTGCATTTGTATTGTTGTGAACACTGGGATGAACACTGAGATTGGGAAAATACAGACACAAATACATGAGGCCTCTTTGGAAGAGAGCAACACTCCTTTGAAGAAGAAACTGGATGAATTTGGAAATAGGCTTACGACTGTAATTGGGCTTGTTTGCCTCATTGTTTGGGTGATCAATTACAAATATTTTCTCACATGGGATCTTGTGAATGGATGGCCTACCAATTTTCGATTTTCTTTTGAGAAATGCACCTACTATTTTAAGATTGCTGTTGCTCTTGCAGTAGCTGCAATCCCAGAGGGCCTTCCTGCAGTAATCACAACTTGTTTAGCTCTCGGTACAAGAAAAATGGCACAAAAGAATGCAATTGTACGGAAGCTTCCAAGTGTGGAGACCTTGGGATGTACAACTGTGATTTGTTCGGATAAAACTGGGACCTTGACAACAAACCAGATGTCGGCGACAGAATTTTTCACATTAGGGGGGAAAATCACATCTTCTCGAATTTTTCATGTGGAAGGCTCAACTTATGATCCAAAGGATGGTGGAATTGTTGATTGGAATTGCTACAACATGGATGCTAACTTGCAAGCCATGGCAGAAATATGTGCTGTCTGCAATGATGCTGGGATTTTTTGCAATGGCCGTCTCTTCAGAGCAACAGGTTTGCCCACTGAGGCAGCTCTCAAGGTTTTGGTTGAAAAAATGGGAGTCCCAGATGTTAAGGCAAGGAACAAAATCCGTGACACACAGCTTGCTGCAAGCTATTTGATTGATCGCAGTACGGTGAAGTTAGGATGTTGTGAATGGTGGACAAAAAGATCAAAAAGAGTTGCTACACTAGAGTTTGACCGCATTCGCAAATCAATGAGTGTTCTCGTCCGTGAGCCCACTGGGCGCAATCGACTTCTTGTCAAGGGTGCTGTTGAGAGTCTATTGGAGCGCAGTTCACATGTGCAGCTTGCTGATGGATCACTTGTTCCCTTAGATGAACCTTATAGGCAACTGTTGTTGTTGAGAAACTTGGAAATGAGTTCAAAGGGTCTGCGGTGCTTGGGTCTGGCATATAAAGATGACTTGGGAGAGTTCTCAGACTACTATACTGAGACTCATCCTGCCCACAAGAAGTTGCTTGATCCAGCTTGCTACTCCTCCATTGAGAGTGAACTGGTTTTCGTGGGGGTCGTAGGTCTAAGGGACCCACCTCGTGATGAAGTTCACAAGGCAATTGATGATTGTAGAGAAGCTGGGATCAAGGTTATGGTCATAACTGGAGATAATAAGTCCACTGCTGAGGCCATCTGTCAGGAAATTCGATTGTTTTCCGAAGGTGAGCAACTTAAAGGGGCAAGTTTCACAGGTAAAGAGTTCATGGCTCTTTCCCCATCAGAACAAATTGAAATTCTGTCAAAACCTGGAGGGAAGGTTTTCTCACGCGCTGAGCCTAGGCACAAGCAAGAAATTGTTAGGATGCTGAAAGAGATGGGGGAAATTGTTGCAATGACTGGAGATGGTGTCAATGATGCCCCTGCATTGAAACTTGCTGACATTGGAATCGCCATGGGCATCACCGGGACTGAGGTTGCAAAAGAAGCTTCAGATATGGTTCTGGCAGATGACAATTTCAGTACCATAGTTTCAGCCGTTGCAGAGGGTCGCTCAATTTATAACAACATGAAGGCTTTTATTAGGTATATGATATCTTCCAATGTTGGGGAGGTTATATCCATTTTCTTAACTGCTGCACTGAGCATACCAGAATGTATGATACCTGTGCAGCTTCTGTGGGTCAATTTGGTCACCGATGGTCCACCTGCAACAGCTCTTGGATTTAACCCTGCTGATGTTGATATAATGCGGAAACCACCTCGTAAAAGTGATGATGCTCTGATAAACTCTTGGGTTCTCTTCCGTTACTTGGTAATTGGTTCATATGTGGGCATTGCAACTGTAGGAATCTTCATTTTGTGGTACACCCAGGCTTCATTTCTTGGTATCAATCTTGTGAGTGATGGGCACACATTGGTTGAACTATCCCAGCTTCGCAACTGGGGAGAGTGCTCCTCATGGTCCAATTTCACTGTCACTCCATTCACAGTTGGTGATGGGCGGGTGATCACATTTTCAAATCCTTGTGACTACTTCTCTGTTGGTAAAGTTAAGGCGGTGACTCTCTCACTCTCTGTCTTGGTGGCAATAGAGATGTTCAATTCCCTCAACGCCCTCTCAGAAGACAACAGCTTAGTCACAATGCCACCCTGGAGGAATCCTTGGCTTCTTGTTGCTATGTCATTCTCATTTGGGATGCATTGCCTCATACTCTATGTTCCCTTCCTGGCAGATGTTTTTGGTATCGTCCCTCTGAGTCTGAATGAATGGTTTCTTGTTATCCTGGTTTCTGCACCTGTGATTCTTATCGATGAGGTTCTTAAATTAGTGGGAAGGAGACGAAGATGGAAAAGAAAGAAGAAGAAGACAGCATAA 3156 0.4414 MEENPFPAWSWSVEQCLKEYNVRIDKGLSSYEVEKRRERYGWNELTKEKGKPLWRLVLEQFDDMLVKILLVAAFISFILAYLHGDECEELGFEAYVEPFVIVLILVLNAIVGVIQETNAEKALEALKEMQCESGKVLRDGYFVPDLPARELVPGDIVELRVGDKVPADMRVAALKTSTLRVEQSSLTGEAMPVLKGTSPIFMDDCELQAKENMVFAGTTVVNGSCICIVVNTGMNTEIGKIQTQIHEASLEESNTPLKKKLDEFGNRLTTVIGLVCLIVWVINYKYFLTWDLVNGWPTNFRFSFEKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSATEFFTLGGKITSSRIFHVEGSTYDPKDGGIVDWNCYNMDANLQAMAEICAVCNDAGIFCNGRLFRATGLPTEAALKVLVEKMGVPDVKARNKIRDTQLAASYLIDRSTVKLGCCEWWTKRSKRVATLEFDRIRKSMSVLVREPTGRNRLLVKGAVESLLERSSHVQLADGSLVPLDEPYRQLLLLRNLEMSSKGLRCLGLAYKDDLGEFSDYYTETHPAHKKLLDPACYSSIESELVFVGVVGLRDPPRDEVHKAIDDCREAGIKVMVITGDNKSTAEAICQEIRLFSEGEQLKGASFTGKEFMALSPSEQIEILSKPGGKVFSRAEPRHKQEIVRMLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALSIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMRKPPRKSDDALINSWVLFRYLVIGSYVGIATVGIFILWYTQASFLGINLVSDGHTLVELSQLRNWGECSSWSNFTVTPFTVGDGRVITFSNPCDYFSVGKVKAVTLSLSVLVAIEMFNSLNALSEDNSLVTMPPWRNPWLLVAMSFSFGMHCLILYVPFLADVFGIVPLSLNEWFLVILVSAPVILIDEVLKLVGRRRRWKRKKKKTA* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0853 1051 Pfam Cation transporting ATPase, C-terminus 811 1037 IPR006068 -
Vvi15g0853 1051 Gene3D - 26 248 - -
Vvi15g0853 1051 CDD P-type_ATPase_SERCA 9 1038 - -
Vvi15g0853 1051 Gene3D - 361 771 IPR023214 -
Vvi15g0853 1051 SUPERFAMILY HAD-like 362 830 IPR036412 -
Vvi15g0853 1051 SUPERFAMILY Calcium ATPase, transmembrane domain M 7 1042 IPR023298 -
Vvi15g0853 1051 Pfam haloacid dehalogenase-like hydrolase 361 740 - -
Vvi15g0853 1051 Gene3D - 374 625 IPR023299 GO:0000166
Vvi15g0853 1051 PRINTS Sodium/potassium-transporting ATPase signature 357 378 - -
Vvi15g0853 1051 PRINTS Sodium/potassium-transporting ATPase signature 979 1003 - -
Vvi15g0853 1051 Pfam E1-E2 ATPase 131 344 - -
Vvi15g0853 1051 NCBIfam HAD-IC family P-type ATPase 303 390 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi15g0853 1051 NCBIfam HAD-IC family P-type ATPase 699 815 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi15g0853 1051 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 790 1044 - -
Vvi15g0853 1051 Gene3D - 59 1039 - -
Vvi15g0853 1051 SFLD p-type atpase 345 778 IPR044492 -
Vvi15g0853 1051 SFLD C1.7: P-type atpase like 345 778 - -
Vvi15g0853 1051 SUPERFAMILY Calcium ATPase, transduction domain A 136 243 IPR008250 -
Vvi15g0853 1051 PANTHER CALCIUM-TRANSPORTING ATPASE 15 1046 - -
Vvi15g0853 1051 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 374 625 - -
Vvi15g0853 1051 FunFam Calcium-transporting ATPase, putative 208 360 - -
Vvi15g0853 1051 ProSitePatterns E1-E2 ATPases phosphorylation site. 366 372 IPR018303 -
Vvi15g0853 1051 Pfam Cation transporter/ATPase, N-terminus 9 76 IPR004014 -
Vvi15g0853 1051 PRINTS P-type cation-transporting ATPase superfamily signature 364 378 - -
Vvi15g0853 1051 PRINTS P-type cation-transporting ATPase superfamily signature 726 745 - -
Vvi15g0853 1051 PRINTS P-type cation-transporting ATPase superfamily signature 640 650 - -
Vvi15g0853 1051 PRINTS P-type cation-transporting ATPase superfamily signature 750 762 - -
Vvi15g0853 1051 PRINTS P-type cation-transporting ATPase superfamily signature 618 629 - -
Vvi15g0853 1051 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Vvi15g0853 1051 FunFam Calcium-transporting P-type ATPase, putative 620 771 - -
Vvi15g0853 1051 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 371 622 IPR023299 GO:0000166
Vvi15g0853 1051 FunFam Calcium-transporting ATPase, putative 112 246 - -
Vvi15g0853 1051 SMART Cation_ATPase_N_a_2 7 81 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0853 Vvi-Chr15 17129507 17134086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0853 2 1048 Primary Pumps ATPases(2) AT4G00900 79.924 0.0 1717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0853 K01537 - vvi:100253574 2060.03