Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0851 ATGACATTAGATGCGATTACTAGTGTTTCTCTTGCTCCGGCTGCAGAAGTTCTTTCTCAGATTGTAGAGATTATGATTGAGGTTGCAGTTGCAGCTGATGATGTCCTGATTGAGAAGAGGAGTTTTGCAGAGCTCCAACATTACTTGCAAAGGATCATTCCCATCCTAAAGGAGTTGAATAAGAAAGGCATTAGTCATTCCGAGAGCTTAAACAATGCCATTGAGATTCTCAATCGAGAGACCAAAGTTGCAAAGCAACTAACGCTTGAATGTTGCAAGAAAAACAAAGTTTATCTCTTGATGCATTGCCGGTCAGTAGTTCAGCGCTTAGAGAACACTACAAGAGAGATGAGCCGTGCACTAAGCCTCATTCCGTTGGCTTCATTGGATCTGTCATCAAGTATAATTGAAGAGATTGGAAAGTTGTGTGACAATATGGGGACAGCAGAGTTTAGGGCAGCTATAGCAGAAGAGGAGATTTTGGAGAAAATTGAAGCAGGAATACAGGAGAGGAGTGTCGATCGTTCTTATGCCAATAATTTACTGGTTCTCATTGCACAGACTCTTGGAATTTCAACCGAGCGGTCTGCATTGAAAAAGGAATTTGAAGAATTTAAGAAAGAGATAGAAAGCACACATGTGAGGAAGAACATGGCAGAAGCTATACAGATGGATCAGATAATTGCTTTACTAGGAAGGGCGGATGCTGCTTCATCTCCTAAGGAGAAAGAAATGAGGTATTTCACCAAACGTAACTCCTTGGGTAGTCAACCATTAGAACCTCTCCTGTCATTTTATTGCCCAATCACTCGGGATGTGATGACAGACCCGGTGGAGACTTCTTCAGGACAGACATTTGAGAGAAGTGCTATAGAGAAGTGGTTTGCAGATGGGAATAAATTGTGTCCCTTGACTATGACCCCTTTAGACACATCAATTCTAAGACCCAACAAAACTCTACGGCAATCAATTGAAGAGTGGAGGGATAGAAACACAATGATTAGAATTGCTTCTATCAAACCAAAACTCTTGTCAGAAGATGAGGAAGAAGTGCTTAATTGCCTGGAACAGCTACAGGACCTTTGTGAACAAAGGGACCTTCATCAGGAATGGGTAGTACTGGAGAACTATGCACCAACTCTTATTAAACTTCTTGGTGAAAAAAACCGGGACATAAGGATTCGTGCTCTTCTCATTCTTTGTATCTTGGCAAAGGATAGCGATGACACAAAGGTAAAAATTGTTGAAGTTGATAATTCAATAGAATCAATTGTTCACTCTCTTGGACGTCGTATTGAGGAAAGGAAGCTAGCTGTAGCTTTACTATTGGAATTATCAAAAAGTGATTTAGTACGAGACAGCATTGGGAAGGTTCAGGGTTGCATACTCCTCTTGGTGACTATGTTAAGCAGTGATGATAATCAAGCTGCCAGAGATGCACGGGAGCTTTTGGAGAATCTTTCATTCTCTGATCAGAACATTATACAGATGGCAAAAGCAAATTATTTTAAATATTTGCTTCAGCGTCTATCTTCAGGACCAGAAGATGTCAAATGCATCATGGCAACAACTTTGGCAGAACTGGAGCTGACTGACCCTAATAAATCATCTTTGCTTGAAGATGGTGTATTGGGATCACTTCTTCCCTTGGTCACAAATGGTGAACTTCCGATGAAAATGGTGGCCATCAAAGCTCTTAAAAACCTCTCAAGCTTACAAAAGAACGGCCTGAGGATGATTAAAGAAGGTGCAATGCGCCCATTACTTGAACTTCTCTTTAGTCATGGCCCAGTTCCAAGTTTGCGTGAACAGGCAGCAGCCACAATTATGCACCTTGCCATATCAACCATGTCACAGGAAACTGAGCAGCCACAGGTGTCATTGCTGGAATCTGATGAGGACATTTTCAAGCTCTTCTCCTTGGTTCACTTGACAGGGCCTGACATACAAAAAAGCATTCTCTGTACCTTCTTTGCTTTATGTCAATCCCCATCTGCTACAAATATCAAGGCCAAGTTGAGACAGTGCACAGCTGTTCAGGTATTGGTTCAATTATGTGAACTCGATAACCCAGAAGTACGGCCAAATGCTGTTAAACTGTTATCTCGCTTGACTGATGATGGCGAGGAGGCCACCATCTTGGAGCACATGGATCAGAAGGATGTTGAGACCTTAGTTAAGATCATTAAATCTTCTACTGATGAGGACGAGGTTGGTTCTGCAATGGGTATCATCTCTAACCTGCCTGAAGACCCCCAGATCACTCGATGGTTTCTTGATGCTGGAGCTCTTTCAATCATTTTTAATTTTCTTCGTGATACCAAGCAGAAAGGGCCTTGTAAGGATCAGTTAATAGAGAATACTGTTGGAGCAGTATGCCGTTTCACTGTTTCCACAAACCAGGAATTACAAAAGAAAGCTGCTGAAGCTGGCATTATACCTGTTTTGGTTCAGTGGTTAGAACGAGGAACCAGCTTGACAAAAAAACGTTCAGCCATTTCGCTTGCACAATTTTCACAAAGTTCACCTAGACTGAGCAGATCATTACCAAAGAGAGGGGGGTTCTTGTGCTTCTCTGCCCCACCAGAAACTGGCTGCCCAGTTCATCGAGGAATCTGCTCAATTGAATCATCATTTTGCCTTCTAGAGGCTGATGCAGTGGGCCCTCTCGTGAGAGTTCTTGCTGAAGCAGACCCACAAGCCTCTGAGGCTTCTTTTGATGCGTTATTGACATTAATTGAAGGAGAGCGATTACAAAGTGGCAGTAAGGTGCTTGCAGATGCAAATGCCATACCACTGATAATAAGATCACTTGGTTCCTCCTCCCCTACATTACAGGAGAAAGCTCTGAATGCCCTAGAAAGGATTTTTCGGCTGGTGGAGTTCAAACAAAGGTATGGAGCCTCTGCACAGATGCCTTTAGTTGACTTAACTCAGCGAGGAAGCAGTAGTACCAAATCTTTGGCAGCCAGAATACTTGCTCACTTGAATGTGCTTCATGAACAGTCTTCTTACTTTTAA 3021 0.425 MTLDAITSVSLAPAAEVLSQIVEIMIEVAVAADDVLIEKRSFAELQHYLQRIIPILKELNKKGISHSESLNNAIEILNRETKVAKQLTLECCKKNKVYLLMHCRSVVQRLENTTREMSRALSLIPLASLDLSSSIIEEIGKLCDNMGTAEFRAAIAEEEILEKIEAGIQERSVDRSYANNLLVLIAQTLGISTERSALKKEFEEFKKEIESTHVRKNMAEAIQMDQIIALLGRADAASSPKEKEMRYFTKRNSLGSQPLEPLLSFYCPITRDVMTDPVETSSGQTFERSAIEKWFADGNKLCPLTMTPLDTSILRPNKTLRQSIEEWRDRNTMIRIASIKPKLLSEDEEEVLNCLEQLQDLCEQRDLHQEWVVLENYAPTLIKLLGEKNRDIRIRALLILCILAKDSDDTKVKIVEVDNSIESIVHSLGRRIEERKLAVALLLELSKSDLVRDSIGKVQGCILLLVTMLSSDDNQAARDARELLENLSFSDQNIIQMAKANYFKYLLQRLSSGPEDVKCIMATTLAELELTDPNKSSLLEDGVLGSLLPLVTNGELPMKMVAIKALKNLSSLQKNGLRMIKEGAMRPLLELLFSHGPVPSLREQAAATIMHLAISTMSQETEQPQVSLLESDEDIFKLFSLVHLTGPDIQKSILCTFFALCQSPSATNIKAKLRQCTAVQVLVQLCELDNPEVRPNAVKLLSRLTDDGEEATILEHMDQKDVETLVKIIKSSTDEDEVGSAMGIISNLPEDPQITRWFLDAGALSIIFNFLRDTKQKGPCKDQLIENTVGAVCRFTVSTNQELQKKAAEAGIIPVLVQWLERGTSLTKKRSAISLAQFSQSSPRLSRSLPKRGGFLCFSAPPETGCPVHRGICSIESSFCLLEADAVGPLVRVLAEADPQASEASFDALLTLIEGERLQSGSKVLADANAIPLIIRSLGSSSPTLQEKALNALERIFRLVEFKQRYGASAQMPLVDLTQRGSSSTKSLAARILAHLNVLHEQSSYF* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0851 1006 Gene3D - 338 432 IPR011989 -
Vvi15g0851 1006 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Vvi15g0851 1006 SUPERFAMILY ARM repeat 877 997 IPR016024 -
Vvi15g0851 1006 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Vvi15g0851 1006 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Vvi15g0851 1006 Gene3D - 869 1004 IPR011989 -
Vvi15g0851 1006 SUPERFAMILY ARM repeat 636 915 IPR016024 -
Vvi15g0851 1006 SUPERFAMILY RING/U-box 255 334 - -
Vvi15g0851 1006 Gene3D - 13 128 IPR036537 GO:0007166
Vvi15g0851 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 583 613 IPR000225 GO:0005515
Vvi15g0851 1006 SUPERFAMILY ARM repeat 336 664 IPR016024 -
Vvi15g0851 1006 CDD RING-Ubox_PUB 265 314 IPR045210 -
Vvi15g0851 1006 Gene3D - 433 854 IPR011989 -
Vvi15g0851 1006 Coils Coil 344 364 - -
Vvi15g0851 1006 SMART arm_5 448 489 IPR000225 GO:0005515
Vvi15g0851 1006 SMART arm_5 365 405 IPR000225 GO:0005515
Vvi15g0851 1006 SMART arm_5 490 530 IPR000225 GO:0005515
Vvi15g0851 1006 SMART arm_5 665 706 IPR000225 GO:0005515
Vvi15g0851 1006 SMART arm_5 751 797 IPR000225 GO:0005515
Vvi15g0851 1006 SMART arm_5 918 958 IPR000225 GO:0005515
Vvi15g0851 1006 SMART arm_5 531 571 IPR000225 GO:0005515
Vvi15g0851 1006 SMART arm_5 572 614 IPR000225 GO:0005515
Vvi15g0851 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 337 IPR013083 -
Vvi15g0851 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0851 Vvi-Chr15 17119473 17125848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0851 264 1006 U-box Gene Family AT1G76390 29.658 4.31e-69 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0851 - - vvi:100248467 1862.04