Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0847 ATGGTTTTCCATTATCCCATCTGGGTTCTGGCTCTGGTGCTCGGTCTCGTGGCGGTTGCTCTGAAAAAATGGTCGAGAGTCGGAGACTGGTTTCAGGCTTATCAGCTCTTCAAGGTTCCGGAATTCAATGAAAACATGCAAGACAATTATCTGTACAGAAAAGTTTCGGTATATATTAATTCGTTGGTTGCTCTGGAAGATTCTGATTTCACGAACCTATTCTCCGGGAAGAAGGCGAACGAAATCGTTCTGGCTCTGGACCCGAATCAGACCGTCCACGACACGTTTCTGGGGGCTAGGGTTTCGTGGACGAATGCCCATGCAAACAGTTGCAGGACCTTCGTGTTGAAGATTAGGAAGAAGGACAAGCGGCGAATTCTCCGGCCGTATCTGCAGCACATACACTCCGTGTTCGACGAATTTGAGCAGAGAAAAAGGGAGGTGAGTCTCTACATGAACGGCGCCGACGGGCGGTGGCGGTCGGTGCCGTTCTCGCACCCCTCGACGCTGGAGACGATCGCCATGGATTCCGACCTCAAGAACAGAGTCAAATCGGACTTGGAGTCGTTTCTGAAATCGAAGCAGTACTACCACCGGTTAGGCCGCGTTTGGAAGAGAAGCTTTCTCCTCTACGGCCCCTCCGGCACTGGAAAATCGAGCTTTGTCGCTGCAATGGCAAAGTTCCTCTGCTACGACGTGTACGACGTCGATTTATCGAGAGTCTCCGACGACTCCGATCTGAAACTGCTTCTGTTGCAGACGAGAAACAAGTCGGTGATTGTGGTGGAAGACCTCGACCGATTCGTGGTCGACAAAACGACGACGCTGAGCTTCTCCGGCGTTCTCAATTTCATGGATGGGCTATTGAATTCCTGCTGCGGAGACGAGAGAGTCATGGTTTTCACGATGAACACCAAAGACCACATCGATCCAGCCATGTTGAGACCAGGAAGAGTCGATCTCCACATCTACTTCCCTCTCTGCGATTTCAACGCTTTCAAAACCCTAGCCAACAGTTATCTGGGAGTCAAGGATCACAAGCTTTTCCCTCAACTGGAGGAGATTTTCCAAAGCGGCGCCACCCTCAGCCCGGCGGAGATCGGCGAGATCATGATCGTCAACCGAAGCTCCCCGAGCCGGGCTCTAAAATCCGTCATCACAGCTCTGCAAATCAATGGCGATTCAAGGAGCCCGGCGAAAATTGGGCAACGGAGCGCCGATAAACCGCCTAGACCGGTGGAAGAAGCTGGCGACCAGGGCGGCGGCTTTCTTTGCCGGGAAAGTGTGCACACAGTGAGAGAGTTCCGGAAACTGTACGGCTTCTTGAGGTTGAAGAGCAGCAGAAAATCTGGATCGTTCGATTTAGATTCAAACCAAAATGAACGATGA 1389 0.5184 MVFHYPIWVLALVLGLVAVALKKWSRVGDWFQAYQLFKVPEFNENMQDNYLYRKVSVYINSLVALEDSDFTNLFSGKKANEIVLALDPNQTVHDTFLGARVSWTNAHANSCRTFVLKIRKKDKRRILRPYLQHIHSVFDEFEQRKREVSLYMNGADGRWRSVPFSHPSTLETIAMDSDLKNRVKSDLESFLKSKQYYHRLGRVWKRSFLLYGPSGTGKSSFVAAMAKFLCYDVYDVDLSRVSDDSDLKLLLLQTRNKSVIVVEDLDRFVVDKTTTLSFSGVLNFMDGLLNSCCGDERVMVFTMNTKDHIDPAMLRPGRVDLHIYFPLCDFNAFKTLANSYLGVKDHKLFPQLEEIFQSGATLSPAEIGEIMIVNRSSPSRALKSVITALQINGDSRSPAKIGQRSADKPPRPVEEAGDQGGGFLCRESVHTVREFRKLYGFLRLKSSRKSGSFDLDSNQNER* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0847 462 Pfam ATPase family associated with various cellular activities (AAA) 209 327 IPR003959 GO:0005524|GO:0016887
Vvi15g0847 462 SMART AAA_5 204 329 IPR003593 GO:0016887
Vvi15g0847 462 MobiDBLite consensus disorder prediction 396 420 - -
Vvi15g0847 462 Gene3D - 160 324 IPR027417 -
Vvi15g0847 462 PANTHER BCS1 AAA-TYPE ATPASE 43 394 - -
Vvi15g0847 462 Pfam Domain associated at C-terminal with AAA 21 105 IPR025753 -
Vvi15g0847 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 389 IPR027417 -
Vvi15g0847 462 Gene3D - 325 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0847 Vvi-Chr15 17087846 17089234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0847 200 323 Calmodulin-binding Proteins AT3G56690 27.536 3.63e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0847 - - vvi:100255828 879.011