Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0838 ATGGGAACACATGTTGAAAGCTTTTGGATCTTCGCTTTGGTTTCCAAATGCGAAGCTCTTTCTCTGGCCAGCATTGCATGGGTCGTTTTCTTTGCTTGGTTTCTGCTGAGCATGATTTTTTGGGCTTACCCTGGTGGCCCCGCTTGGGGGAAGTACAGGTGGAGGAAAGCTTCTCCGTCGGCTTCCATGGGTAAGCCGATACCGGGTCCGAGAGGTTTTCCGGTGGTTGGGAGTATGAAGCTTATGGCCAGCCTTGCCCACCACCGGATTGCTGCGGCGGCGGAGGCCTGTGGAGCCAAGCGGCTTATGGCTTTCAGCCTGGGCGAGACTCGGGTTATCGTTACCTGCAATCCTGATGTTGCGAAAGACATTCTGAACAGCTCCGTGTTTGCTGATCGTCCGGTGAAGGAGTCGGCTTACAGTCTGATGTTCAACAGAGCAATTGGGTTCGCTGCCTACGGAGTTTACTGGCGAACCCTCCGGAGGATCGCTGCCACGCATCTCTTCTGCCCGAAACAGATCAAAGCCTCGGAGGCTCAGCGAGCGGAGATCGCCGCTGAAATGGCGGCAATGTTTGGAGAAAACACAGAGCCTTTCCGCGTCCGAGACGTCCTGAAACGGGCTTCACTCAGCAGCATGATGTGCTCTGTTTTTGGACGAAAATACCAGCTCGATTCCTCCAACAACGAAGCTCACGAACTCAGGACTCTTGTCGAAGAAGGCTACGACCTCTTGGGCACTCTCAACTGGTCCGACCACCTTCCCTTTCTCGGAGACTTTGACCCACAAAAGATCCGCATGAGATGCTCCAACCTTGTCCCCAAAGTCAACCGCTTCGTTACCAGAATCATCGCTGAACACCGTGCCCGAACCACTGAAAAAATCCGAGATTTCGTCGATGTTTTGCTCTCCCTTCAAGGGCCTGATAAATTATCCGACTCCGATATGATCGCCGTCCTTTGGGAAATGATATTTAGGGGGACTGATACAGTGGCGGTTTTGATCGAGTGGATACTCGCGAGGTTGGTGCTCCACCCCGACGTCCAATCACGAGTCCACGACGAGCTCGACAGGGTCGTCGGAGAGTCACGCGCTGTCGCCGAGTCTGATATCACGGCCATGGAGTACCTCCCCGCGGTGGTGAAAGAGGTTATCAGGCTGCACCCTCCTGGTCCACTCCTCTCGTGGGCTCGATTGGCTACAACTGATACAACCGTTGATGGGCATCACGTGCCAGCTGGGACTACAGCCATGGTCAATATGTGGGCCATCACCCGGGACCCGAACGTGTGGTCAGACCCACTCGAATTTAAGCCCGATAGGTTCTCTGGAATGGGAGCTGACACCGATATATCTGTATTCGGTTCTGATCTTCGACTCGCCCCGTTTGGGTCGGGCCGCAGGGTCTGCCCTGGAAAGACTCTTGGGTTGACCACGGTTACCTTTTGGGTAGCCTCGCTTTTGCACGAGTTTGAATGGAAGCCGTTGGATGGGAATAATAACGTTGACCTGTCGGAAGTTCTGAAGCTGTCGTGTGAGATGGAGAAGCCCCTCACCGTCAAAGTGCACCGTAGGCGTAGTACTAGTACCTCATCCCCATAA 1602 0.5418 MGTHVESFWIFALVSKCEALSLASIAWVVFFAWFLLSMIFWAYPGGPAWGKYRWRKASPSASMGKPIPGPRGFPVVGSMKLMASLAHHRIAAAAEACGAKRLMAFSLGETRVIVTCNPDVAKDILNSSVFADRPVKESAYSLMFNRAIGFAAYGVYWRTLRRIAATHLFCPKQIKASEAQRAEIAAEMAAMFGENTEPFRVRDVLKRASLSSMMCSVFGRKYQLDSSNNEAHELRTLVEEGYDLLGTLNWSDHLPFLGDFDPQKIRMRCSNLVPKVNRFVTRIIAEHRARTTEKIRDFVDVLLSLQGPDKLSDSDMIAVLWEMIFRGTDTVAVLIEWILARLVLHPDVQSRVHDELDRVVGESRAVAESDITAMEYLPAVVKEVIRLHPPGPLLSWARLATTDTTVDGHHVPAGTTAMVNMWAITRDPNVWSDPLEFKPDRFSGMGADTDISVFGSDLRLAPFGSGRRVCPGKTLGLTTVTFWVASLLHEFEWKPLDGNNNVDLSEVLKLSCEMEKPLTVKVHRRRSTSTSSP* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0838 533 CDD CYP78 100 518 - -
Vvi15g0838 533 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi15g0838 533 PRINTS E-class P450 group I signature 460 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi15g0838 533 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi15g0838 533 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi15g0838 533 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi15g0838 533 PRINTS E-class P450 group I signature 470 493 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi15g0838 533 PRINTS P450 superfamily signature 461 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi15g0838 533 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi15g0838 533 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi15g0838 533 PRINTS P450 superfamily signature 470 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi15g0838 533 PANTHER CYTOCHROME P450 78A7-RELATED 3 526 - -
Vvi15g0838 533 SUPERFAMILY Cytochrome P450 65 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi15g0838 533 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 463 472 IPR017972 GO:0005506|GO:0016705
Vvi15g0838 533 FunFam Cytochrome P450 78A5 59 525 - -
Vvi15g0838 533 Pfam Cytochrome P450 68 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi15g0838 533 Gene3D Cytochrome P450 59 532 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0838 Vvi-Chr15 17005434 17007131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0838 1 527 Cytochrome P450 AT2G46660 68.352 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0838 K20619 - vvi:104881848 1059.67