Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0837 ATGCAGCTCTTTGTCAAAACCCTAACTGGGAAAACCATCACCGTCGAGGTGGAATCAAGTGACACTGCCGACGATGTCAAGGCCAAGATTCCGAACATGGAAGGTTCTGTGGATTCCGCCGCACGTGTAAAGGCTGATCTTTGCCGGAAAACAACTGGAAGATGA 165 0.497 MQLFVKTLTGKTITVEVESSDTADDVKAKIPNMEGSVDSAARVKADLCRKTTGR* 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0837 54 Gene3D - 1 49 - -
Vvi15g0837 54 PANTHER UBIQUITIN 1 36 - -
Vvi15g0837 54 FunFam Polyubiquitin-C 1 31 - -
Vvi15g0837 54 ProSiteProfiles Ubiquitin domain profile. 1 35 IPR000626 GO:0005515
Vvi15g0837 54 Pfam Ubiquitin family 3 35 IPR000626 GO:0005515
Vvi15g0837 54 SUPERFAMILY Ubiquitin-like 1 42 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0837 Vvi-Chr15 16998389 16998747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0837 1 43 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 67.442 1.68e-13 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0837 - K02977 aly:9306530 59.6918