Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0835 ATGAATCTGAATGAGATGTTAGGTGGGGAGGAGTATAAGTATTCTCCCATGGCAGCAGTGGATGATGGGTCTTTGGCTTGTCTGAATTCAATTGCAACCGCCAGAAAGAAGAAGGAAAAGAACAAGAGGAGGTTCAGTGATGAACAGATTAGATTATTGGAATCCATGTTTGAGTCTGAGACAAAGCTTGAACCCCGAAAGAAGCTGCAGGTGGCGAAGGAGCTGGGGTTGCAGCCACGGCAGGTTGCGATATGGTTTCAGAATAAGAGAGCTAGGTGGAAGTCAAAGCAGCTGGAGCGGGACTACAGTATACTGAGAGGGAATTACAACAGCCTGGTTTCTCGGTTTGAATCCTTGAAGAAGGAGAAGCAGGCCCTGGTTATACAGCTACAGAAGTTGAACGAGATGGTACAGCAGTCTGGAGGGGCAAAACAAGATTCTGAGCAGCGGCTAGTACAGAACAGTGCTGAGAGTGAAGCAGACAACAGAGACAATGGCAATTGTGAATCTGAAGTGAAGCCCAACTTGTCGTTGGAGAGATCAGAACATGGAGGAGGTGTCCTTTCGGACGATGATAGCAGCATAAGGGCTGACTACTTTGTGATGGAAGAAGAGCCCAGCCTTCTGACCATGGTGGAACCTGTTGATGGTTGCTTGACATCACCGGAAGATTGGGGCAGTTGGGACTCTGAGAATGTGTTTGATCAGTCTAGTGGTAGTTATCAGTGGTGGGATTTCTGGGGTTGA 747 0.4779 MNLNEMLGGEEYKYSPMAAVDDGSLACLNSIATARKKKEKNKRRFSDEQIRLLESMFESETKLEPRKKLQVAKELGLQPRQVAIWFQNKRARWKSKQLERDYSILRGNYNSLVSRFESLKKEKQALVIQLQKLNEMVQQSGGAKQDSEQRLVQNSAESEADNRDNGNCESEVKPNLSLERSEHGGGVLSDDDSSIRADYFVMEEEPSLLTMVEPVDGCLTSPEDWGSWDSENVFDQSSGSYQWWDFWG* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0835 248 MobiDBLite consensus disorder prediction 139 161 - -
Vvi15g0835 248 Pfam Homeobox associated leucine zipper 96 138 IPR003106 GO:0006355|GO:0043565
Vvi15g0835 248 Coils Coil 116 136 - -
Vvi15g0835 248 PRINTS Lambda-repressor HTH signature 76 92 IPR000047 GO:0003677
Vvi15g0835 248 PRINTS Lambda-repressor HTH signature 67 76 IPR000047 GO:0003677
Vvi15g0835 248 CDD homeodomain 45 97 IPR001356 GO:0003677
Vvi15g0835 248 Gene3D - 32 103 - -
Vvi15g0835 248 FunFam Homeobox-leucine zipper protein ATHB-7 24 96 - -
Vvi15g0835 248 ProSitePatterns 'Homeobox' domain signature. 71 94 IPR017970 GO:0000981|GO:0006355
Vvi15g0835 248 Pfam Homeodomain 40 94 IPR001356 GO:0003677
Vvi15g0835 248 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 35 165 IPR045224 GO:0003700
Vvi15g0835 248 MobiDBLite consensus disorder prediction 139 190 - -
Vvi15g0835 248 SUPERFAMILY Homeodomain-like 19 98 IPR009057 -
Vvi15g0835 248 ProSiteProfiles 'Homeobox' domain profile. 36 96 IPR001356 GO:0003677
Vvi15g0835 248 SMART HOX_1 38 100 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0835 Vvi-Chr15 16989888 16990732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0835 8 248 Homeobox Transcription Factor Family AT2G46680 47.692 6.41e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi15g0835 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0835 K09338 - vvi:100245524 501.901