Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0834 ATGGGTAGCGGAGAAAAGGGTCTTCTGAACTTCCATCTGCATCTCCCTCACCTTCATGGGAAAAAGCAGTACAGGGATGTTCCAAAGGGGTGTTTGGCTATCAAGGTAGGGCAAGGAGAAGAGCAACAGAGATTCATAGTCCCAGTAATATACTTCAATCACCCTCTCTTCATGCAGTTGCTTAAGGAAGCCGAAGAGGAATATGGGTTTGAGCAGCAAGGGGCAATCACCATTCCCTGTCATGTCGAGGAGTTCCGATACGTTCAAGGCATGATCGACAGAGAACACTCTCTTCACCCTCAGAACCATAACCACCACCACCACCATGGTGGCTGTTTTAGAGTTTGA 348 0.4799 MGSGEKGLLNFHLHLPHLHGKKQYRDVPKGCLAIKVGQGEEQQRFIVPVIYFNHPLFMQLLKEAEEEYGFEQQGAITIPCHVEEFRYVQGMIDREHSLHPQNHNHHHHHGGCFRV* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0834 115 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 22 87 IPR003676 GO:0009733
Vvi15g0834 115 Pfam Auxin responsive protein 22 91 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0834 Vvi-Chr15 16970881 16971228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0834 26 104 Calmodulin-binding Proteins AT5G20810 51.250 1.34e-21 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0834 K14488 - vvi:100267831 223.402