Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0832 ATGGGGCAGTGTTACGGGAAGCCGGTTGTGAATGGGAACGGTAAAGGAGGTGTGGTCGAGGAGTATCCGCAATCGCCGTTGCCGTCGGTGGGGAACGGAGCGGCGAGCGTGCAGTCAGTGAAGACGCCTGCTCGATCATCGTCGACGAGCCCCTGGCGGAGTCCCTTCCCGCACGGCAGTGCTTCCAGTCCGCTTCCGGCTGGAGTGGCGCCGTCTCCGGCGAGGTCGTCGACTCCGCGGAGGTTCTTCCGTCGCCCGTTCCCGCCTCCGTCGCCGGCGAAGCATATCAAGGCGTCTCTCGCGAAGCGGCTCGGTCCTGCGAAGCCGAAGGAGGGTCCGATCCCGGAAGAAGGTACGGAACCTGAACAATTACTTGATAAGAGCTTCGGCTACGGTAAGAATTTTGGTGCCAAGTATGAATTGGGGAAGGAGGTTGGGCGAGGGCACTTTGGTCATACCTGCTCTGCTAGGGGCAAGAAAGGAGAGCTAAGAGACCAACCTCTTGCAGTGAAGATCATATCAAAAGCGAAGATGACAACAGCAATAGCAATTGAAGATGTTCGTAGAGAGGTAAAGATATTGAAGGCTCTATCAGGGCATGCGCATCTAGTCAAATTTTATGATGCATGTGAAGATGCAAATAATGTGTACATAATCATGGAATTGTGCGAAGGTGGGGAACTACTAGACAGAATTTTATCAAGAGGAGGAAGATACACTGAAGAAGATGCAAAAGCAATTGTTGTACAAATCTTAAGCGTTGTTGCATTTTGTCATCTTCAAGGCGTTGTGCACCGTGACTTAAAGCCAGAGAATTTCCTTTTTACCTCAAGAAGTGAAGATGCTGATATGAAGCTTATTGATTTTGGTCTTTCTGACTTTATTAGACCAGATGAAAGACTCAATGATATTGTTGGAAGTGCATACTATGTTGCACCTGAAGTTCTCCATAGATCCTATTATCTGGAAGCAGATATTTGGAGTGTTGGCGTTATTACATATATCTTGTTATGTGGAAGCAGGCCTTTCTGGGCAAGGACAGAATCAGGAATTTTTCGTGCAGTATTAAGAGCTGATCCTAATTTTGATGATTTACCCTGGCCTACAGTCTCAGCTGAAGCCAAGGATTTTGTTAAAAGGCTATTGAATAAGGACTACAGGAAGAGAATGACTGCCGTCCAAGCTCTGACTCACCCCTGGTTGCGGGATGGAAGTCATCCTATCCCTCTGGATATATTGATCTATAAGTTGGTCAAATCTTATCTTCTTGCTACACCTTTTAAACGTGCTGCACTAAAGGCTCTCTCAAAAGCTTTGACGGAGGATGAGCTGGTGTACCTTAGATCTCAATTCAAGCTGTTGGAACCTGGTAGAGATGGGAGTGTGTCTTTGGATAGCTTCAAAATGGCCCTTGCACGGAATGCAACTGATGCCATGAAGGAATCTAGGGTTCCTGATATTCTAAATGCGTTGGAACCATTGTGCTATAGAAGGATGGACTTTGAAGAGTTTTGTGCTGCAGCTATTAGCACACATCAACTGGAGGCTTTGGAAGGGTGGGAGCAGATCGCCTCTACCGCTTTTGAAATTTTCGAGCAGGAGGGGAATCGTGTCATCTCAGTTGAGGAGTTGGCTCGGGAACTGAATCTGGGTCCTTCAGCTTATTCGGTCCTGAAAGAGTGGATCAGAAACTCAGACGGAAAGCTCAGTTTACTTGGATATACCAAATTTTTGCATGGTGTAACTCATCGAAGCTCAAACACCAGACAGCATTAG 1776 0.473 MGQCYGKPVVNGNGKGGVVEEYPQSPLPSVGNGAASVQSVKTPARSSSTSPWRSPFPHGSASSPLPAGVAPSPARSSTPRRFFRRPFPPPSPAKHIKASLAKRLGPAKPKEGPIPEEGTEPEQLLDKSFGYGKNFGAKYELGKEVGRGHFGHTCSARGKKGELRDQPLAVKIISKAKMTTAIAIEDVRREVKILKALSGHAHLVKFYDACEDANNVYIIMELCEGGELLDRILSRGGRYTEEDAKAIVVQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYYLEADIWSVGVITYILLCGSRPFWARTESGIFRAVLRADPNFDDLPWPTVSAEAKDFVKRLLNKDYRKRMTAVQALTHPWLRDGSHPIPLDILIYKLVKSYLLATPFKRAALKALSKALTEDELVYLRSQFKLLEPGRDGSVSLDSFKMALARNATDAMKESRVPDILNALEPLCYRRMDFEEFCAAAISTHQLEALEGWEQIASTAFEIFEQEGNRVISVEELARELNLGPSAYSVLKEWIRNSDGKLSLLGYTKFLHGVTHRSSNTRQH* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0832 591 Pfam Protein kinase domain 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0832 591 Gene3D Transferase(Phosphotransferase) domain 1 229 413 - -
Vvi15g0832 591 ProSitePatterns Protein kinases ATP-binding region signature. 145 171 IPR017441 GO:0005524
Vvi15g0832 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Vvi15g0832 591 ProSiteProfiles Protein kinase domain profile. 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0832 591 FunFam CDPK-related kinase 1 437 509 - -
Vvi15g0832 591 MobiDBLite consensus disorder prediction 29 57 - -
Vvi15g0832 591 CDD STKc_CAMK 138 400 - -
Vvi15g0832 591 SUPERFAMILY EF-hand 427 580 IPR011992 -
Vvi15g0832 591 MobiDBLite consensus disorder prediction 102 121 - -
Vvi15g0832 591 FunFam CDPK-related kinase 3 131 303 - -
Vvi15g0832 591 FunFam Calcium-dependent protein kinase SK5 311 408 - -
Vvi15g0832 591 SUPERFAMILY Protein kinase-like (PK-like) 129 420 IPR011009 -
Vvi15g0832 591 PANTHER SERINE/THREONINE-PROTEIN KINASE 125 566 - -
Vvi15g0832 591 SMART serkin_6 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0832 591 MobiDBLite consensus disorder prediction 1 95 - -
Vvi15g0832 591 Gene3D Phosphorylase Kinase; domain 1 133 228 - -
Vvi15g0832 591 FunFam CDPK-related kinase 1 132 227 - -
Vvi15g0832 591 Gene3D - 419 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0832 Vvi-Chr15 16956942 16963703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0832 1 585 EF-hand Containing Proteins AT3G50530 59.716 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi15g0832 Pkinase 7.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0832 - - vvi:100250518 1120.92