Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0830 ATGGAAGAGATTAGTATTATACCCCAATCTTCAGCTGCTTCTCTTCTTGTGATGCCTCAGGAGCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGCCCAGCCTTCAGGAGAGGCTTCAGTTCATAGTGCAAAGCCAGGCAGAGTGGTGGGCTTATGCCATATTCTGGCAGACGTGCAATGATGATAATGGGAGGATTTTTCTAGCTTGGGGAGATGGGCATTTCCAGGGGGGTAAAGGGATGGTTCCCAGGCAGTTGGGGCTCAGAGGTGATCAGTCCAGAGCAGGGCTCTTCACCAGGAAGAAGGCAATCAAGGGGATTCAAGCTCTCATCACAGAGAACCCGGACATGGACGGGCTGATGGATGGAGATGTCACAGACGTGGAGTGGTTCTATGTCATGTCGCTGACACGGTGCTTCTCGGCGGGCGATGGGGTTCCGGGGAAAGCCTTGAGCTCAGGGTCTTTGGTGTGGTTGACTGGTGCTCAGGAGCTGATGTTCTACAACTGTGAAAGGGCTAAAGAAGCTCAAATCCATGGAATCGACACTTTTGTGTGTATACCAACTGGAAACGGGGTCCTTGAATTGGGATCTTCTGATGTGATCAGGGAAAACTGGGGGTTGGTGCAACAGGCCAAGTCGTTGTTCGGGTCTGACCATTTCATTGGCTTAGTCTCCAAACACTCCCCTCCCTCCGCCCCCATCCACTTCTCGTTTGCGGACATCGGGATCATCAGTGGCATACAAGAGGAGGAGGGAACTAGACAGGACAAAAAACCCATGGGAAATGCTAAGAAAGAAGGAATAGTTAATGGGTGTCAATCTTTATGCTTAGAATCAGAGCATTCCGATTCCGACTGCCCACTAGTTGCCGTCACGGTCGAAAAGAGAGTCCCCAAAAAGCGAGGAAGAAAGCCGAGGCTCGGCCGGGACGCCCCCCTCAACCACGTGGAGGCGGAACGGCAGCGGCGGGAGAAGCTGAACCACCGCTTCTACGCCCTGCGGGCGGTGGTCCCGAACGTGTCAAGGATGGACAAAGCATCCTTGCTAGCGGACGCAGTGTCGTACATCAATGAGCTGAAAGCTAAAGTCGACGAATTGGAGTCACAAGTTCACAAGGAATCCAAGAAAGTAAAGCTGGAAATGGCGGACACCACAGACAACCAAAGCACCACCACTTCCGTCGACCAAACCGGGCCAACACCACCACCACCCCCACCACCCCCAAGCTCCGCCACCGGTGGCGGGGTTGCGCTGGAAGTGGAGATCAAGATCGTGGGTCCAGACGCCATGATCAGAGTCCAATCCGACAACCACAACCACCCATCGGCCAGGCTCATGGGTGCCCTTCGTGACCTTGAATTCCAGGTCCACCATGCCAGTATGTCCTCCATCAATGACCTCATGCTTCAAGACGTCGTTGTCAGACTTCCTGACAGATTCAGGAACGAAGACGCCTTGAAATCTGCCCTTCTCCCTCTACTCGATCAGTAG 1494 0.5388 MEEISIIPQSSAASLLVMPQEQAQAQAQAQAQPSLQERLQFIVQSQAEWWAYAIFWQTCNDDNGRIFLAWGDGHFQGGKGMVPRQLGLRGDQSRAGLFTRKKAIKGIQALITENPDMDGLMDGDVTDVEWFYVMSLTRCFSAGDGVPGKALSSGSLVWLTGAQELMFYNCERAKEAQIHGIDTFVCIPTGNGVLELGSSDVIRENWGLVQQAKSLFGSDHFIGLVSKHSPPSAPIHFSFADIGIISGIQEEEGTRQDKKPMGNAKKEGIVNGCQSLCLESEHSDSDCPLVAVTVEKRVPKKRGRKPRLGRDAPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLADAVSYINELKAKVDELESQVHKESKKVKLEMADTTDNQSTTTSVDQTGPTPPPPPPPPSSATGGGVALEVEIKIVGPDAMIRVQSDNHNHPSARLMGALRDLEFQVHHASMSSINDLMLQDVVVRLPDRFRNEDALKSALLPLLDQ* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0830 497 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 373 IPR036638 GO:0046983
Vvi15g0830 497 Coils Coil 350 377 - -
Vvi15g0830 497 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 35 216 IPR025610 -
Vvi15g0830 497 Gene3D - 309 377 IPR036638 GO:0046983
Vvi15g0830 497 MobiDBLite consensus disorder prediction 298 321 - -
Vvi15g0830 497 Pfam Helix-loop-helix DNA-binding domain 315 360 IPR011598 GO:0046983
Vvi15g0830 497 SMART finulus 317 366 IPR011598 GO:0046983
Vvi15g0830 497 CDD bHLH_AtAIB_like 309 373 - -
Vvi15g0830 497 MobiDBLite consensus disorder prediction 374 415 - -
Vvi15g0830 497 PANTHER MYC 25 492 IPR045084 GO:0003700|GO:0006355
Vvi15g0830 497 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 360 IPR011598 GO:0046983
Vvi15g0830 497 MobiDBLite consensus disorder prediction 398 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0830 Vvi-Chr15 16927034 16928527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0830 35 495 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 39.177 7.77e-87 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi15g0830 bHLH-MYC_N 9.3e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0830 - K13422 vvi:100262545 933.71