Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0822 ATGAGCATGAAGGTTCCGGCGACGAGGACGCGTGTCGGGAGATACGAAATCGGTAAAACCTTGGGTGAGGGGAGCTTCGCCAAGGTCAAGTACGCTCGCAACTCCGACACCGGCGATAGCGTCGCCATCAAGGTGCTCGACCGCGATCATGTTCTCCGGCACAAGATGGTGGAACAGATAAAAAGAGAGATATCGACAATGAAGCTGATTAAGCATCCGAATGTTGTGACGATCTTCGAGGTTATGGCGAGCAAAACAAAGATCTACATTGTCGTTGAGTTTGTTGACGGAGGAGAGCTCTTTGACAGAATTGCCAAGAATGGGAGACTTAAAGAGGATGAAGCCAGGAGATACTTCCAGCAGCTCATTAATGCTGTAGATTATTGCCACAGTAGAGGCGTGTACCATAGAGATTTGAAGCCCGAGAATTTACTTCTGGATTCATACGGTGTTCTTAAAATATCAGACTTTGGATTGAGTGCCCTTTCACAGCAAGTGAGGGAAGATGGGCTGTTTCACACTGCCTGTGGGACGCCAAATTATGTTGCTCCTGAGGTTCTCAATAATAAAGGATATGATGGTGCATCAGCTGATATATGGTCTTGTGGGGTCATTCTATTTGTACTTCTGGCTGGGTACTTGCCTTTTGATGAAGTAAGCCTCATGGCTTTGTATAAAAAGATCTGCAAGGCTGATTTCTCATGTCCATCATGGTTATCACCTGGTGCAAAGAAGCTGATAAACCGTATTCTTGATCCCAATCCTGTAACTCGGATAACAATTCCTGAAATCTTGGAAGATGGATGGTTCAAGAAAGGGTACCAGCCAACATGTTTTCAGCAGGAAGAGGATGTGAATGTTGATGATGTGGATGCTGCTTTCAATAATTCAGAGGAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTCGAGCTTATTTCTAGGTCTCAGAGTTTCAATCTTGAAAACTTGTTCGGGAAGCAGGGTCTTGTGAAGCGAGAGACAAGTTTCACTTCCCAGCGCCCTGCCCATGAGATTATGTCTAAAATTGAGGAAACTGCAAAGCCTCTAGGTTTCAACGTTCGCAAGCAAAACTACAAGATGAAGTTGCAAGGTGACAAAACTGGACGGAAGGGTCATCTCTCTGTAGCTACTGAGGTGTTTGAGGTGGCTCCCTCCTTGCACATGGTGGAGCTTCGGAAAACTGGTGGTGACACACTGGAGTTCCACAAGTTCTACAAAAGCTTCTCTTCAGGATTAAAAGATATAGTCTGGAAATCAGAAGCGAATACTGAAGAATTGAGGTCATAG 1326 0.4495 MSMKVPATRTRVGRYEIGKTLGEGSFAKVKYARNSDTGDSVAIKVLDRDHVLRHKMVEQIKREISTMKLIKHPNVVTIFEVMASKTKIYIVVEFVDGGELFDRIAKNGRLKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDSYGVLKISDFGLSALSQQVREDGLFHTACGTPNYVAPEVLNNKGYDGASADIWSCGVILFVLLAGYLPFDEVSLMALYKKICKADFSCPSWLSPGAKKLINRILDPNPVTRITIPEILEDGWFKKGYQPTCFQQEEDVNVDDVDAAFNNSEENLVTERKEKPVSMNAFELISRSQSFNLENLFGKQGLVKRETSFTSQRPAHEIMSKIEETAKPLGFNVRKQNYKMKLQGDKTGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKFYKSFSSGLKDIVWKSEANTEELRS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0822 441 SUPERFAMILY Protein kinase-like (PK-like) 12 289 IPR011009 -
Vvi15g0822 441 Pfam NAF domain 309 368 IPR004041 GO:0007165
Vvi15g0822 441 SMART serkin_6 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0822 441 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0822 441 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Vvi15g0822 441 FunFam Non-specific serine/threonine protein kinase 306 431 - -
Vvi15g0822 441 FunFam Non-specific serine/threonine protein kinase 8 310 - -
Vvi15g0822 441 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vvi15g0822 441 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0822 441 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 416 - -
Vvi15g0822 441 CDD STKc_SnRK3 14 269 - -
Vvi15g0822 441 CDD CIPK_C 313 427 - -
Vvi15g0822 441 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Vvi15g0822 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vvi15g0822 441 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Vvi15g0822 441 Gene3D Transferase(Phosphotransferase) domain 1 95 299 - -
Vvi15g0822 441 Gene3D Kinase associated domain 1, KA1 306 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0822 Vvi-Chr15 16877672 16882440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0822 5 438 CBL-interacting serine-threonine protein kinases AT1G01140 78.409 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi15g0822 Pkinase 2.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0822 - - vvi:100254007 814.298