Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0818 ATGGCAGAGGGCACAGAAGTTGAGGATAGGGTGGATCTTGATGATGATAATTACATGGAAGAAATGGATGATGATGTTGAAGAACAAATAGAAGATGGAGTAGAGGGAGGCGGTGATGAAAATGTTGAAGAAGAATATGAGGATTCAAAAGCTGGGGGCAGTGGCGAAGATCAATTGCTGGAAGTGGACGAAAGCCGTATTGCTAATGAACCTCTGAAAGATGAAGAAAATCCTACTGCTTCTGTTGATGAAGATGAAAAAGAGAAGCATGCTCAACTTCTTGCCCTTCCTCCTCATGGTTCTGAAATTTTCATTGGTGGGCTTCCTCGAGAAGCCTTGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAGGTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTTATATCCTTCAAAACAAAGGAGATTGCACAGAAGGCCATTGAAGAGTTACATAGTAAAGAATTCAAGGGGAGAACAATAAGATGTTCTCTATCTGAATCTAAACACAGATTGTTCATTGGCAATGTCCCAAAGAGCTGGACAGATGATGAATTCAGAAAAGTCATTGAGGATATTGGTCCTGGTGCTGAGAACATTGAACTTATAAAGGATCCTCAAAATCCAAGCCGTAATCGTGGTTTTGCTTTTGTTGAGTATTACAACAATGCTTGTGCAGATTATGGGAGGCAGAAAATGTCTAGTTCAAATTTCAAGCTAGATGGCAATACCCCGACAGTTAGCTGGGCTGATCCAAAGAGTACATCTGATCATTCTGCTGCCGCACAGGTAAAGGCTCTTTATGTGAAAAATATTCCTGAAAATACTACTACTGAACAACTGAAGGAACTGTTCCAACGCCATGGGGAAGTCACAAAAGTTGTTATGCCACCTGCCAAATCTGGTCAAAGCAAACGGGATTTTGGATTCATCCATTTTGCTGAAAGGTCGAGTGCATTGAAGGCTGTCAAGGATACAGAGAAACATGAAATTGATGGCCAGGCATTGGACGTTTCCCTTGCTAAGCCTCAGAGTGATAAAAAGTTTGAGGGCGTCCATCCTTACAGTTCTGGGCATCCAAATTTTCTTCCACACCCAGGGTATGGTGGTTTTGGTGGAAATCCATATGGCTCTCTAGGGCCTGGATATGGCGTTTCGGCTCCATTTCAGCAGCCAGTGATATATGGTAGGGGGCCAATGCCAGCAGGAATGCATATGGTGCCAATGGTGCTACCAGATGGTCGAATTGGCTATGTTCTACAGCAACCTGGAGTACAGATGCCACCTCCAAGGCCTCGAAGAAACGAACGCAGTAATGGGTCAAGCGGACAGCAAGGACGAGGGGGAAGTAGTGGAAGTGGCGATGACAACCGCAGTAGAAGGTACCGGCCCTATTAG 1431 0.4444 MAEGTEVEDRVDLDDDNYMEEMDDDVEEQIEDGVEGGGDENVEEEYEDSKAGGSGEDQLLEVDESRIANEPLKDEENPTASVDEDEKEKHAQLLALPPHGSEIFIGGLPREALEEDLRDLCEPIGEALEVRLMKNRDSGESKGYAFISFKTKEIAQKAIEELHSKEFKGRTIRCSLSESKHRLFIGNVPKSWTDDEFRKVIEDIGPGAENIELIKDPQNPSRNRGFAFVEYYNNACADYGRQKMSSSNFKLDGNTPTVSWADPKSTSDHSAAAQVKALYVKNIPENTTTEQLKELFQRHGEVTKVVMPPAKSGQSKRDFGFIHFAERSSALKAVKDTEKHEIDGQALDVSLAKPQSDKKFEGVHPYSSGHPNFLPHPGYGGFGGNPYGSLGPGYGVSAPFQQPVIYGRGPMPAGMHMVPMVLPDGRIGYVLQQPGVQMPPPRPRRNERSNGSSGQQGRGGSSGSGDDNRSRRYRPY* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0818 476 CDD RRM_SF 103 175 - -
Vvi15g0818 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 263 IPR000504 GO:0003723
Vvi15g0818 476 MobiDBLite consensus disorder prediction 8 46 - -
Vvi15g0818 476 MobiDBLite consensus disorder prediction 446 464 - -
Vvi15g0818 476 SUPERFAMILY RNA-binding domain, RBD 273 384 IPR035979 GO:0003676
Vvi15g0818 476 Gene3D - 264 393 IPR012677 -
Vvi15g0818 476 MobiDBLite consensus disorder prediction 431 476 - -
Vvi15g0818 476 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 181 - -
Vvi15g0818 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Vvi15g0818 476 MobiDBLite consensus disorder prediction 1 83 - -
Vvi15g0818 476 SMART rrm1_1 182 259 IPR000504 GO:0003723
Vvi15g0818 476 SMART rrm1_1 102 175 IPR000504 GO:0003723
Vvi15g0818 476 SMART rrm1_1 277 350 IPR000504 GO:0003723
Vvi15g0818 476 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 182 262 - -
Vvi15g0818 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 354 IPR000504 GO:0003723
Vvi15g0818 476 MobiDBLite consensus disorder prediction 47 83 - -
Vvi15g0818 476 Gene3D - 182 262 IPR012677 -
Vvi15g0818 476 SUPERFAMILY RNA-binding domain, RBD 98 267 IPR035979 GO:0003676
Vvi15g0818 476 SMART rrm2_1 102 175 IPR003954 GO:0003676
Vvi15g0818 476 Gene3D - 9 181 IPR012677 -
Vvi15g0818 476 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 20 463 - -
Vvi15g0818 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 249 IPR000504 GO:0003723
Vvi15g0818 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 347 IPR000504 GO:0003723
Vvi15g0818 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0818 Vvi-Chr15 16832728 16835884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0818 103 446 Eukaryotic Initiation Factors Gene Family AT2G23350 26.121 5.60e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0818 K13161 - vvi:100241942 847.425