Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0814 ATGCCAGAAAGTATGAGTATATCTGTGAATGGGCAGTCTCAGGTCCCTCCTGGCTTCCGATTTCATCCCACTGAAGAGGAGCTCTTGAACTACTACTTGAGGAAGAAGGTTTTGTATGAGAAGATCGACTTGGACGTAATTCGTGATGTTGATCTGAATAAGCTTGAGCCATGGGACATTCAAGAGAAGTGTAGAATAGGATCCACCCCTCAAAACGATTGGTACTTCTTCAGCCACAAGGACAAGAAATATCCAACGGGAACCAGGACTAATCGCGCCACTGCAGCTGGGTTTTGGAAGGCCACAGGCCGTGATAAGGTGATATACAGCAGCTTCAAACGGATTGGAATGAGGAAGACTCTGGTGTTCTATAAAGGCCGAGCCCCACATGGCCAAAAATCTGACTGGATCATGCATGAGTACAGACTTGATGATAACACCAATGATACCCAGGTCTCTAATGCTGTGGCAGAAGCACAGGAAGAGGGGTGGGTGGTTTGTCGTATCTTCAAGAAGAAAAACCATCACAAAACCGTAGAAAGCAGTAGCCCTATGAGTTCGTCATCCATCACTGCAGAGACAAGGACCCAGTTGCTGAATTCAAGTGATGAGGGAGCTCTGGAGCAGATATTTCAGCATATGGGGAGGACATGCAAGGAGGATAACAATGAAGCAAACAACAGCAGAAGATTTCTGAGGTCCATTGACACAGTCATCAACAATGGCAGTACCCTCCATGACAGATTCATGAAGCTTCCAACACTAGAGAGCCCAAACTCCACAAGTAGCCAAAACTGTTACCAGCCCATCCATGTCCAGATGATCCCAGAGAATGAAGCAGCTCCCATCACCCCCCACCCAGTCTACCACTTGGACACGGGCCTGAATGATGACTGGGCAGCCCTTGATAGGCTTGTGGCTTCTCACCTGAATGGTCAAACAGACACCTCCAAGCAACTAGCCTGCTTCAATGACCCCTCCATGCCTTTCTCTTCACCCACTGATCATAATGATCATGACTCCCAGCTGCTGCAGCCACGCTCCTCATCATCAACCACCAGGTCTTACCACCCCACTCAGGACTACAACACTGAAATCGACCTCTGGAGCTTTACCAGATCATGTCTGCAATCATCTGACCCGCTATGCCACATCTCCAACACTCCATCATAG 1173 0.4834 MPESMSISVNGQSQVPPGFRFHPTEEELLNYYLRKKVLYEKIDLDVIRDVDLNKLEPWDIQEKCRIGSTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSSFKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTNDTQVSNAVAEAQEEGWVVCRIFKKKNHHKTVESSSPMSSSSITAETRTQLLNSSDEGALEQIFQHMGRTCKEDNNEANNSRRFLRSIDTVINNGSTLHDRFMKLPTLESPNSTSSQNCYQPIHVQMIPENEAAPITPHPVYHLDTGLNDDWAALDRLVASHLNGQTDTSKQLACFNDPSMPFSSPTDHNDHDSQLLQPRSSSSTTRSYHPTQDYNTEIDLWSFTRSCLQSSDPLCHISNTPS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0814 390 FunFam NAC domain-containing protein 24 176 - -
Vvi15g0814 390 SUPERFAMILY NAC domain 10 172 IPR036093 GO:0003677|GO:0006355
Vvi15g0814 390 ProSiteProfiles NAC domain profile. 15 172 IPR003441 GO:0003677|GO:0006355
Vvi15g0814 390 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 247 - -
Vvi15g0814 390 MobiDBLite consensus disorder prediction 323 359 - -
Vvi15g0814 390 Gene3D NAC domain 24 178 IPR036093 GO:0003677|GO:0006355
Vvi15g0814 390 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0814 Vvi-Chr15 16791123 16792523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0814 1 387 NAC Transcription Factor Family AT2G46770 56.511 1.57e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi15g0814 NAM 9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0814 - - vvi:100245500 800.431