Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0811 ATGTCTCAACCAAGGCAATTTCAGATGGTGGGGGGAACCAATGCTGGCCAGTTCAATGACACCACCTATACCAAAATATTTGTTGGTGGATTGGCTTGGGAGACTCAGAGAGATACCATGAGGCGTTATTTTGAGCAGTTTGGAGAGATCCAGGAAGCTGTTGTTATCACTGATAAAAATACAGGGAGATCCAAGGGTTATGGTTTTGTTACATTCAAGGATCCAGATGCAGCCATGAGGGCATGTCAGAACCCATCTCCTGTAATAGATGGAAGGAGGGCAAACTGCAATCTTGCATCACTCGGAGCACACAAGACTCGTCCTCCCACTCCTCAACATGGTGCAGGAAGGTTTAGGCCAGCACCAGGGTTAGTGGCTCCACCTGCTTATCATGGCTCCTCGTCTACATATTTTCATCAACCCACTAGTCAATATGCATTCCCTTATTCAACTTATGGGTACACCGGATATTCACAAGATTCCATGTACCCCATGAACTTTTACAGTGTCTATGGAGGTCAACAATTCTCACCTTACTACACCACTGGAGCAACAGGGCCACCAGGGATTTTTCACAATTTCTATCCATATTATGCTCAATATGCCCAGAGTAGTCAAGGTAATGGTTTTGGCGTTCAATATCCCCAGGTGATGCAGTATCCATATTTGCCTCAGCACTATAGTTCTGCAGGGATTCTATCGCTTCCTCCAGTTGCTGGAGCAGCCACAAGCACAGCTGGTGTGACAGCAACAGCAGGAGCAGCTGGAACAGGGGCTAGTGCTTCTCAAACCGCCGGAACCACTTCTGAACAGGATTCATCAACTTAA 828 0.4674 MSQPRQFQMVGGTNAGQFNDTTYTKIFVGGLAWETQRDTMRRYFEQFGEIQEAVVITDKNTGRSKGYGFVTFKDPDAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGAGRFRPAPGLVAPPAYHGSSSTYFHQPTSQYAFPYSTYGYTGYSQDSMYPMNFYSVYGGQQFSPYYTTGATGPPGIFHNFYPYYAQYAQSSQGNGFGVQYPQVMQYPYLPQHYSSAGILSLPPVAGAATSTAGVTATAGAAGTGASASQTAGTTSEQDSST* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0811 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Vvi15g0811 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Vvi15g0811 275 SUPERFAMILY RNA-binding domain, RBD 17 119 IPR035979 GO:0003676
Vvi15g0811 275 Gene3D - 2 116 IPR012677 -
Vvi15g0811 275 PANTHER BOULE-RELATED 15 254 - -
Vvi15g0811 275 FunFam RNA-binding protein 24-B isoform X1 11 117 - -
Vvi15g0811 275 SMART rrm1_1 25 97 IPR000504 GO:0003723
Vvi15g0811 275 CDD RRM_RBM24_RBM38_like 24 99 - -
Vvi15g0811 275 MobiDBLite consensus disorder prediction 255 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0811 Vvi-Chr15 16765810 16767409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0811 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 9.91e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0811 - - vvi:100257521 506.908