Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0809 ATGTCGGTTGGAGAGCTTGCTGCCGTTTACGCATGTCTTGCCCTCCACGATGATGGCATTCCCATTACTGCAGAGAAAATTTCGACATTGGTGAAAGCAGCTAATGTTCCAGTGGAACCTTATTGGCCACTCTTGTTCGCAAAGTTGGTGGAGAAGAGAAGTATTGAGGATCTCATAACTAATGTGGGCTCTGGTGGTGGTGGTGGTGCTGTGGCTGTTGCTGCCCCTACTTCTGGTGGTGGTGGTGGAGCTGCTGCTCCTCCTCCAGTTGAGGAGAAGAAGGAAGAACCCAAGGAAGAGAGTGATGATGACATGGGCTTTAGCTTGTTTGATTAG 336 0.497 MSVGELAAVYACLALHDDGIPITAEKISTLVKAANVPVEPYWPLLFAKLVEKRSIEDLITNVGSGGGGGAVAVAAPTSGGGGGAAAPPPVEEKKEEPKEESDDDMGFSLFD* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0809 111 MobiDBLite consensus disorder prediction 89 105 - -
Vvi15g0809 111 FunFam 60S acidic ribosomal protein P1 1 63 - -
Vvi15g0809 111 Pfam 60s Acidic ribosomal protein 22 110 - -
Vvi15g0809 111 Gene3D - 1 63 IPR038716 -
Vvi15g0809 111 Hamap 50S ribosomal protein L12 [rpl12]. 6 111 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vvi15g0809 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 111 - -
Vvi15g0809 111 CDD Ribosomal_P1 5 61 - -
Vvi15g0809 111 MobiDBLite consensus disorder prediction 73 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0809 Vvi-Chr15 16735069 16735718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0809 1 111 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 58.407 6.61e-37 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0809 K02942 - vvi:100261912 147.902