Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi15g0804 | ATGTGGACCTGCAGCCCATCGGATCATCATCCAAATATAAATCAAACAATCCATTTACTGGCTTTGGTTTGCAGGACAATGGCCTCAGCTTCCTTACTATCCTCTTCTTCTTCTTCCTCCTCCATCCTCTGTAAATCCACACCCACCGCACCAAAGCGTTATGTTTCGTCCTCGTTGCCCTCTTCAATCCATTTCGCCCACCCGAAACTTTCCTGCTCAATTTCCATCTCCCTCTCCAGGACCAGATTTTCCACAGTCGTTGCGGTGGCCGCGGAAGATATCAACACAGATGACAGTTCTCCCCAAGAATCGAAGAGTTCTGTGAGACCTTGTGAACTGTACGTGTGTAACCTTCCGAGAAGCTGTGGCATTTCGGAGCTTCTCAGTATGTTTAAACCTCATGGAACAGTTCAATCTATTGAGGTTTGCCGGAACGCGGAGACCGGAGTGAGCCGGGGATCTGGGTATGTTACGATGAGCTCCATGAGGGAAGCCAAAGCTGCAATTGCTGCTTTAGATGGATCTGATGTGGGCGGGCGTGAAATGCGGGTTAGGTTTTCAACTGACATGAATTTCAGGCGGAGGAACAGCGAGGCTCTGAATTCAGCACCCATGAGGAATCTGATATTTGAAAGCCCGTACAAACTGTATGTTGGGAATCTGGCTTGGGCTATTAAACCTGAGGACTTGAGGAATCATTTTAGCCAGTTTGGAACTGTGGTGAGCGCAAGAGTAGTCCACGATCGAAAAGCAGGAAAGCACCGTGCTTATGGCTTTCTCTCCTTCTCTTCAGCTGCAGAATGTGAAGCTGCCATGTCTCTGAATGGAAAGGAATTTCGTGGTAGGTCGCTAGTAGTCAGTGCAGGCATGAAAAGGGTCGAGTCTTGA | 888 | 0.4854 | MWTCSPSDHHPNINQTIHLLALVCRTMASASLLSSSSSSSSILCKSTPTAPKRYVSSSLPSSIHFAHPKLSCSISISLSRTRFSTVVAVAAEDINTDDSSPQESKSSVRPCELYVCNLPRSCGISELLSMFKPHGTVQSIEVCRNAETGVSRGSGYVTMSSMREAKAAIAALDGSDVGGREMRVRFSTDMNFRRRNSEALNSAPMRNLIFESPYKLYVGNLAWAIKPEDLRNHFSQFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECEAAMSLNGKEFRGRSLVVSAGMKRVES* | 296 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi15g0804 | 295 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 111 | 189 | IPR000504 | GO:0003723 | |
Vvi15g0804 | 295 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 214 | 291 | IPR000504 | GO:0003723 | |
Vvi15g0804 | 295 | PANTHER | OS02G0815200 PROTEIN | 37 | 288 | - | - | |
Vvi15g0804 | 295 | Gene3D | - | 197 | 295 | IPR012677 | - | |
Vvi15g0804 | 295 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 216 | 284 | IPR000504 | GO:0003723 | |
Vvi15g0804 | 295 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 113 | 183 | IPR000504 | GO:0003723 | |
Vvi15g0804 | 295 | CDD | RRM2_NsCP33_like | 215 | 286 | - | - | |
Vvi15g0804 | 295 | SUPERFAMILY | RNA-binding domain, RBD | 205 | 291 | IPR035979 | GO:0003676 | |
Vvi15g0804 | 295 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 67 | 194 | - | - | |
Vvi15g0804 | 295 | SUPERFAMILY | RNA-binding domain, RBD | 99 | 196 | IPR035979 | GO:0003676 | |
Vvi15g0804 | 295 | Gene3D | - | 84 | 196 | IPR012677 | - | |
Vvi15g0804 | 295 | SMART | rrm1_1 | 215 | 287 | IPR000504 | GO:0003723 | |
Vvi15g0804 | 295 | SMART | rrm1_1 | 112 | 185 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi15g0804 | Vvi-Chr15 | 16698131 | 16699418 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi15g0804 | 113 | 294 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 29.508 | 5.17e-14 | 70.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi15g0804 | - | - | vvi:104881854 | 553.132 |