Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0804 ATGTGGACCTGCAGCCCATCGGATCATCATCCAAATATAAATCAAACAATCCATTTACTGGCTTTGGTTTGCAGGACAATGGCCTCAGCTTCCTTACTATCCTCTTCTTCTTCTTCCTCCTCCATCCTCTGTAAATCCACACCCACCGCACCAAAGCGTTATGTTTCGTCCTCGTTGCCCTCTTCAATCCATTTCGCCCACCCGAAACTTTCCTGCTCAATTTCCATCTCCCTCTCCAGGACCAGATTTTCCACAGTCGTTGCGGTGGCCGCGGAAGATATCAACACAGATGACAGTTCTCCCCAAGAATCGAAGAGTTCTGTGAGACCTTGTGAACTGTACGTGTGTAACCTTCCGAGAAGCTGTGGCATTTCGGAGCTTCTCAGTATGTTTAAACCTCATGGAACAGTTCAATCTATTGAGGTTTGCCGGAACGCGGAGACCGGAGTGAGCCGGGGATCTGGGTATGTTACGATGAGCTCCATGAGGGAAGCCAAAGCTGCAATTGCTGCTTTAGATGGATCTGATGTGGGCGGGCGTGAAATGCGGGTTAGGTTTTCAACTGACATGAATTTCAGGCGGAGGAACAGCGAGGCTCTGAATTCAGCACCCATGAGGAATCTGATATTTGAAAGCCCGTACAAACTGTATGTTGGGAATCTGGCTTGGGCTATTAAACCTGAGGACTTGAGGAATCATTTTAGCCAGTTTGGAACTGTGGTGAGCGCAAGAGTAGTCCACGATCGAAAAGCAGGAAAGCACCGTGCTTATGGCTTTCTCTCCTTCTCTTCAGCTGCAGAATGTGAAGCTGCCATGTCTCTGAATGGAAAGGAATTTCGTGGTAGGTCGCTAGTAGTCAGTGCAGGCATGAAAAGGGTCGAGTCTTGA 888 0.4854 MWTCSPSDHHPNINQTIHLLALVCRTMASASLLSSSSSSSSILCKSTPTAPKRYVSSSLPSSIHFAHPKLSCSISISLSRTRFSTVVAVAAEDINTDDSSPQESKSSVRPCELYVCNLPRSCGISELLSMFKPHGTVQSIEVCRNAETGVSRGSGYVTMSSMREAKAAIAALDGSDVGGREMRVRFSTDMNFRRRNSEALNSAPMRNLIFESPYKLYVGNLAWAIKPEDLRNHFSQFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECEAAMSLNGKEFRGRSLVVSAGMKRVES* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0804 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Vvi15g0804 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 291 IPR000504 GO:0003723
Vvi15g0804 295 PANTHER OS02G0815200 PROTEIN 37 288 - -
Vvi15g0804 295 Gene3D - 197 295 IPR012677 -
Vvi15g0804 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 284 IPR000504 GO:0003723
Vvi15g0804 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 183 IPR000504 GO:0003723
Vvi15g0804 295 CDD RRM2_NsCP33_like 215 286 - -
Vvi15g0804 295 SUPERFAMILY RNA-binding domain, RBD 205 291 IPR035979 GO:0003676
Vvi15g0804 295 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 67 194 - -
Vvi15g0804 295 SUPERFAMILY RNA-binding domain, RBD 99 196 IPR035979 GO:0003676
Vvi15g0804 295 Gene3D - 84 196 IPR012677 -
Vvi15g0804 295 SMART rrm1_1 215 287 IPR000504 GO:0003723
Vvi15g0804 295 SMART rrm1_1 112 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0804 Vvi-Chr15 16698131 16699418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0804 113 294 Eukaryotic Initiation Factors Gene Family AT2G36660 29.508 5.17e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0804 - - vvi:104881854 553.132