Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0802 ATGGGTGAAGCAGTTGTGAGTAGTGACGAGGTGATGGAGGTGGAGTTGCAGGAGGAAGAGAAGAGAGTGAGGGAGATGGAGGGGAAGGAGGAGAAAGAGAAGAGTTCATCGGGTGTGGTGAGGTGGGGGAGGTTTCTTCCTCGGATGGTTCTGAGGGTTTTGTTAGTGGAACCTGATGACTCCACTCGTCAGATTATCGCTGCTCTTCTTCGGAAATGCAGTTACAAAGTTGCTGCTGTTTCTGATGGCTTGAAGGCATGGGAGGCACTGAAGGGGGAACCCCAAAATGTTGACCTTATATTAACAGAAGTGGAGTTGCCATCAATATCTGGATTTGCACTTCTGTCATTGATAATGGAGGATGACATTTGCAAGAAGATTCCTGTCATAATGATGTCTTCTCATGATTCAATTAGCATGGTTTTGAAATGCATGTTGAAAGGGGCCGCTGACTTTCTTGTCAAGCCTGTTAGGAAGAATGAGCTGAGGAACCTATGGCAGCATGTTTGGAGAAGGCATGCACCAACTAGTGGGCATGTGTCTCAAAATTTAAGCATTGCACAGAACAAAGTTGAAGTCAGTTCCGAAAACAATACAGCAAGCAATCACTCGAGTGATTATGTGGTTTCTGCACAGAAAAAGAAGGAATGTAGTGAGAAAGGGAGTGATGTCCAAGGATTTTCACAGTTGAAATGCAGGAGTGTATCTAACTTGAGCAATGAGGAGATAAGGAAGCATGAAGACTGTATTGAGTTGGATAAGGAACCTGATAGGCTTGAGAGTTTAACTGGAGGAAAGATAATTACATTGGGATCAGAAGTTGCACCTGGCAATGAAGGTTATCATTCAGCTGCATTCAGATGGGAAGAAAGTCATTGTCGTGCTAAGAGAGTGACTAGTGGGGATGGTGTGGGACCTGCAAGCCATATAGAAAACACTGATATTACTGGTGAGAATCATGGTTGCAATGAAAAATGGATTGAACCTTCTAGTGGGGCCATTGACTTGATAAGCACATTTGATAATTACCCAAAGGACCGTAACCAATTTTCTAGTTCCAATGATGGCATCAGCAAGGATGGTTTTGCTCCACAGTTGGAACTTTCTTTGAGAAGATTCCAACCCTGTAGCTCAAAGAACCATGGAAGTGATGAAAGGCATACACTAAACCATTCCAACTCTTCTGCCTTTTCATGGTATAATAATGGGAAGTCATTGCAACCCCTTTTTCCAACATCGGCCATTAATTGTAGTGAACTGAAGGAGGATGCAAGTTATTCTCATGAACGTTTATTCAATCAACTCCCTGAAAGTACTGTTGGTACTTCTGAGAGGTGTGGTGCTGCACTGAGTGTTACTCAGGGAAATATGACCACTCTGGTCATGGGTCAATCTAATCAAGCAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCTGGTCAGAGTGCTAGTAGTAGTTTATGCAACGGTGTGGTAAGTCATCTTAGCAGCAGTGTGCATGGAGGCATTTGCAACAGAAATGATGGCAATCCCACTTCAAATGGTGCCGTTGTGAGGACTACTGCTCCTGAAAGTGTGAATGACGAAGGTCTCTCCAATAATGATGCATTGAAAGGGATGGATTCCCATCATTCCACCCAACGTGAAGCAGCTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAGGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAGGACAGTTTGTTCGACAAGTGCAGACTGACACTCCAACCGCTGATGGGTAA 1869 0.4436 MGEAVVSSDEVMEVELQEEEKRVREMEGKEEKEKSSSGVVRWGRFLPRMVLRVLLVEPDDSTRQIIAALLRKCSYKVAAVSDGLKAWEALKGEPQNVDLILTEVELPSISGFALLSLIMEDDICKKIPVIMMSSHDSISMVLKCMLKGAADFLVKPVRKNELRNLWQHVWRRHAPTSGHVSQNLSIAQNKVEVSSENNTASNHSSDYVVSAQKKKECSEKGSDVQGFSQLKCRSVSNLSNEEIRKHEDCIELDKEPDRLESLTGGKIITLGSEVAPGNEGYHSAAFRWEESHCRAKRVTSGDGVGPASHIENTDITGENHGCNEKWIEPSSGAIDLISTFDNYPKDRNQFSSSNDGISKDGFAPQLELSLRRFQPCSSKNHGSDERHTLNHSNSSAFSWYNNGKSLQPLFPTSAINCSELKEDASYSHERLFNQLPESTVGTSERCGAALSVTQGNMTTLVMGQSNQAGAAFPTSQLGLIPVQGENNLEPMEELSHGSPVAGQSASSSLCNGVVSHLSSSVHGGICNRNDGNPTSNGAVVRTTAPESVNDEGLSNNDALKGMDSHHSTQREAALMKFRLKRKDRCFEKKVRYQSRKRLAEQRPRVKGQFVRQVQTDTPTADG* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0802 622 ProSiteProfiles Response regulatory domain profile. 52 170 IPR001789 GO:0000160
Vvi15g0802 622 MobiDBLite consensus disorder prediction 596 622 - -
Vvi15g0802 622 CDD psREC_PRR 53 156 - -
Vvi15g0802 622 MobiDBLite consensus disorder prediction 608 622 - -
Vvi15g0802 622 Gene3D - 49 244 - -
Vvi15g0802 622 MobiDBLite consensus disorder prediction 1 34 - -
Vvi15g0802 622 MobiDBLite consensus disorder prediction 298 323 - -
Vvi15g0802 622 PANTHER TWO-COMPONENT RESPONSE REGULATOR 51 349 IPR045279 GO:0009736
Vvi15g0802 622 Pfam Response regulator receiver domain 53 164 IPR001789 GO:0000160
Vvi15g0802 622 Pfam CCT motif 570 612 IPR010402 GO:0005515
Vvi15g0802 622 ProSiteProfiles CCT domain profile. 570 612 IPR010402 GO:0005515
Vvi15g0802 622 MobiDBLite consensus disorder prediction 15 34 - -
Vvi15g0802 622 SMART REC_2 51 166 IPR001789 GO:0000160
Vvi15g0802 622 SUPERFAMILY CheY-like 51 183 IPR011006 -
Vvi15g0802 622 Coils Coil 9 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0802 Vvi-Chr15 16686733 16691695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0802 365 615 Response Regulator Gene Family AT5G24470 34.409 2.11e-21 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vvi15g0802 Response_reg 6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0802 K12130 - vvi:100253885 1183.32