Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0800 ATGGAAGCGCAAAATCTGCAACATTCACAGATTATAGAGATAAGTGTTGATGTTCCTGCTGGAGGAAGGAGCACGGGAGCAAGCAAAATTTGTGGGGAAGCGCCCTGTGGGTTCTCAGATTCTGGATCAAGCTCCAAGGATGCCAAAGAGCGATCAGCTTCCATGCGCAAGCTTTTAATTGCGGTTATACTATGTGCTGTCTTCATGAGTGTTGAAGTTGCTGGTGGCATCAAGGCCAACAGTCTTGCTATATTAACTGATGCAGCACATTTGCTTTCAGATGTTGCAGCTTTTGCTATCTCCTTGTTTTCACTCTGGGCAACAGGATGGGAAGCCACTCCTCGTCAGTCTTATGGATTTTTTAGGGTCGAGATTCTTGGTGCCCTAGTTTCCATCCAGATGATATGGCTACTTGCAGGAATTTTGGTTTATGAAGCCATTGTTAGACTCATTCATGACACAGGTGAGGTCAATGGCTTTCTAATGTTTCTTGTTGCTACTTTTGGTCTGGTTGTGAATATCATGATGGCTTTCTTGTTGGGTCATGACCATGCTCATGGTGGGCATGGTCATGATCATGGCCATAGCCATAATGATCATGATCATGGTCATGGACACAGCCATGGAATGAAGATTACCACACACCATCATCATCATCATGAGCATCACTCAAAAGATGATGAGCATCACTCAAAAGATGATGAGCACCATCATACTCATGAGGATCCTTCTGAGCCGCTGCTGAAGAATTCTTCGCAAGAAGGAAATCAACCAGAATGCAAGAATGAAGAGAAGAGGGGGAGGAACATCAATGTACAGGGAGCTTATCTCCATGTTCTTGGGGACTCCATTCAGAGCATCGGGGTAATGATTGGAGGGGCAATCATATGGATTAAACCTGATTGGAAGATAGTTGACTTAATCTGCACTCTTATCTTTTCTGTTATCGTTTTGGGAACAACAATCAAAATGCTGCGGAGCATACTCGAAGTCTTGATGGAGAGCACACCAAGAGAGATTGATGCAACAATGCTTGAGAAGGGGTTGTGTGAGATGGATGAAGTGGTGGCCGTTCATGAGCTGCATATATGGGCCATCACGGTGGGAAAGGTCCTGTTGGCTTGCCATGTCAAAGTCAGGCCCGAAGCAAATACAGACATGGTGCTGGACAATGTAATAAATTATATTAGAAGGGAGTATAACATCAGTCATGTAACTATACAGATAGAGCGTGAATGA 1239 0.4423 MEAQNLQHSQIIEISVDVPAGGRSTGASKICGEAPCGFSDSGSSSKDAKERSASMRKLLIAVILCAVFMSVEVAGGIKANSLAILTDAAHLLSDVAAFAISLFSLWATGWEATPRQSYGFFRVEILGALVSIQMIWLLAGILVYEAIVRLIHDTGEVNGFLMFLVATFGLVVNIMMAFLLGHDHAHGGHGHDHGHSHNDHDHGHGHSHGMKITTHHHHHHEHHSKDDEHHSKDDEHHHTHEDPSEPLLKNSSQEGNQPECKNEEKRGRNINVQGAYLHVLGDSIQSIGVMIGGAIIWIKPDWKIVDLICTLIFSVIVLGTTIKMLRSILEVLMESTPREIDATMLEKGLCEMDEVVAVHELHIWAITVGKVLLACHVKVRPEANTDMVLDNVINYIRREYNISHVTIQIERE* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0800 412 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 6 411 - -
Vvi15g0800 412 SUPERFAMILY Cation efflux protein transmembrane domain-like 52 334 IPR027469 -
Vvi15g0800 412 NCBIfam cation diffusion facilitator family transporter 55 411 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vvi15g0800 412 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 343 410 IPR036837 -
Vvi15g0800 412 Gene3D Cation efflux protein transmembrane domain 54 332 IPR027469 -
Vvi15g0800 412 MobiDBLite consensus disorder prediction 224 247 - -
Vvi15g0800 412 Pfam Cation efflux family 58 333 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vvi15g0800 412 MobiDBLite consensus disorder prediction 209 223 - -
Vvi15g0800 412 MobiDBLite consensus disorder prediction 187 208 - -
Vvi15g0800 412 MobiDBLite consensus disorder prediction 187 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0800 Vvi-Chr15 16679245 16680483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0800 1 411 Inorganic Solute Cotransporters AT2G46800 69.100 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0800 K14689 - vvi:100259043 723.391