Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0799 ATGGAGAGGCTTCAAGGACCCATGAATCCCTGTTTCTTTGGGGAGCATTTGGATGTGGAGGGTTTGGAACACGGAAGTAGTTTGGAGTTGGGTTACGGGCCATTGCTCAGCACAGAGAGCCAGAGATCTGAGGAAGAACAAGCACTTTTTTCAACTCCTAGTTTAGAGGACAGAATGCCGTTTCTTCAGATGTTACAAAGCGTGGAATCTCCACCATTTTCACCCTTTACAGAACCAAACTTTCAGGCACTTTTGAGATTACAGCACCAAAAGAAGCCTTGGGGGATGACCCACTTGACTGAGTTGGACTCTCGGATTCAGGCACGGGAGCTTGAAAGCTGCATCACCCACGACATATTGGAGATGCATTCTCCAGTCAAATCCGAGACCAAGGAGCCTCAACATCACCAGCATTCAACTCCATGTCTCGAGGGTACAAGCTCCGAGTGCAACCAGGACCAACCCAACTCAGCAGAGAATGGTTGCTTAGACACAAATTCAGGCTCTTCCCCGGCGTGGGTTCAGCCACAAACCAGGCAAAAACAGGCCCACTTGTCCAAATCCCCACCCATCACCCGGGAAAGAAGAAAGCGAAAGAGAACGCGGCCGACGAAGAACAAGGAAGAGGTGGAGAGCCAGCGTATGACCCACATTGCCGTCGAACGCAACCGGAGACGCCAAATGAACGACCATCTCAACGCCCTCCGCTCCCTCATGCCGACCTCCTACATTCAAAGGGGTGACCAAGCGTCCATTATTGGGGGTGCAATCGACTTTGTGAAAGAGCTTGAACAACTGCTTGAATCCCTACAAGCCCAAAAAAGAATGAGGAGAAGTGAAGAAGGCGGTGACGCCTCCACAAACTCCTCCTCATCCTCCCCAAAAATTGCGTCCAAAGGGTTATGCACCCAACACAGATTTGCTCCAGACGAAAGCAATTCTGCCGAGGGAGGAAGGAGCGACGAATTCACATTCACAGCGGACAACAAGTCTGCAGCGGCGGACATAGAAGTCACCGTCATTCAAACGCATGTGAATTTGAAAATTCAGTGCCCAAGAAGGCCCGGCCAGTTGCTTAAGGCCATTGTAGCCCTTGAAGATCTCAGTCTAACAGTGTTGCACCTCAACATCACCTCATTACAAAGCACAGTCCTTTACTCCTTCAATCTCAAGATAGAAGACGACTGCAAGCTAGGTTCAGCAGATGAGGTAGCAGCAGCAGTCCATCAAGTATTCAGCTTCATCAATGGCAGCAGCTGA 1260 0.5016 MERLQGPMNPCFFGEHLDVEGLEHGSSLELGYGPLLSTESQRSEEEQALFSTPSLEDRMPFLQMLQSVESPPFSPFTEPNFQALLRLQHQKKPWGMTHLTELDSRIQARELESCITHDILEMHSPVKSETKEPQHHQHSTPCLEGTSSECNQDQPNSAENGCLDTNSGSSPAWVQPQTRQKQAHLSKSPPITRERRKRKRTRPTKNKEEVESQRMTHIAVERNRRRQMNDHLNALRSLMPTSYIQRGDQASIIGGAIDFVKELEQLLESLQAQKRMRRSEEGGDASTNSSSSSPKIASKGLCTQHRFAPDESNSAEGGRSDEFTFTADNKSAAADIEVTVIQTHVNLKIQCPRRPGQLLKAIVALEDLSLTVLHLNITSLQSTVLYSFNLKIEDDCKLGSADEVAAAVHQVFSFINGSS* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0799 419 Coils Coil 260 280 - -
Vvi15g0799 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 263 IPR011598 GO:0046983
Vvi15g0799 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 212 280 IPR036638 GO:0046983
Vvi15g0799 419 Pfam Helix-loop-helix DNA-binding domain 213 264 IPR011598 GO:0046983
Vvi15g0799 419 MobiDBLite consensus disorder prediction 127 215 - -
Vvi15g0799 419 MobiDBLite consensus disorder prediction 274 298 - -
Vvi15g0799 419 PANTHER TRANSCRIPTION FACTOR FAMA 140 412 IPR044283 GO:0003700|GO:0010052
Vvi15g0799 419 CDD bHLH_AtFAMA_like 215 287 - -
Vvi15g0799 419 MobiDBLite consensus disorder prediction 283 298 - -
Vvi15g0799 419 SMART finulus 218 269 IPR011598 GO:0046983
Vvi15g0799 419 Gene3D - 203 280 IPR036638 GO:0046983
Vvi15g0799 419 MobiDBLite consensus disorder prediction 139 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0799 Vvi-Chr15 16674548 16676456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0799 64 412 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 44.792 3.93e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi15g0799 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0799 - - vvi:100248794 806.594