Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0796 ATGGGGTCTTCAGCAGAAGAGAAACAGAGCAGCAGGCTATGCCATGAGGATGGTGATGTAGAGCCCTGCTCCTACGCCATGCAATTGGTGACCTCCTCTGTGTTGCCCATGGTTATGCAGACCTCCATTGAGCTAGGCCTTTTTGATATCATTGCCAAATTGGGTCAGGCCTCTGCCTCAGAAATAGCTTCCCGGCTGCCTACAAAGAACCCAGAGGCACCCATCATGCTGGATCGTATGCTCTACCTTCTTACCACTCACTCTGTTCTCAGTTGCTCTGCCATTGATGGTGATGAGAGGGTGTACGCACTCACACCTGTCTCCAAATACTTTGCCAGTAATCAAGATGGAGTTTCCTTCGGCCCACTACTGGCTTTGATACAGGACAAGGTCTTCATGGATAGCTGGTCCCAACTGAAAAATGCGATTATTGAAGGAGGAATACCATTTAACAGGGTCCATGGATCTCATGCATTTGAGTACCCTGGCAAGGACCCCAGATTCAATCAGGTTTTCAACACGGCAATGTTCAACCACACAACGATAATTGTTAATAAGATCCTTGAGTCCTACAAGGGTTTTGAGCACCTTACACGGGTGGTCGATGTTGGTGGCGGTCTGGGAACCACCCTTAGCATAATCACATCCAAATACCCCCATATTGAGGCTATTAATTTTGACTTGCCTCATGTTATAGAACATGCTGTGGCGTTTCCTGGTGTGGAACACATTGGAGGGGATATGTTTGAAAGTGTTCCCAAAGGAGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGATCACTGCTTAAAGTTGTTGAAGAACTGCTACAAAGCTCTACCAGAGCATGGGAAGGTGATCATTGTGGAGGGGGTTCTTCCAGAAATACCGGAAAAGGGATCTACTGTGAAAGCTATCTGCCAAACAGATTTGATAATGTTGACTCAAAACCCTGGAGGAAAGGAGAGGACAAGGAAGGAGTTCCTGGACTTGGCAATTGGAGCTGGATTTGCTGGCATCAGATATGAATGCTATGTCTCTTGTTATTGGGTTATGGAAATCTTCATGTAA 1080 0.4602 MGSSAEEKQSSRLCHEDGDVEPCSYAMQLVTSSVLPMVMQTSIELGLFDIIAKLGQASASEIASRLPTKNPEAPIMLDRMLYLLTTHSVLSCSAIDGDERVYALTPVSKYFASNQDGVSFGPLLALIQDKVFMDSWSQLKNAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTIIVNKILESYKGFEHLTRVVDVGGGLGTTLSIITSKYPHIEAINFDLPHVIEHAVAFPGVEHIGGDMFESVPKGDAIFMKWILHDWSDDHCLKLLKNCYKALPEHGKVIIVEGVLPEIPEKGSTVKAICQTDLIMLTQNPGGKERTRKEFLDLAIGAGFAGIRYECYVSCYWVMEIFM* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0796 359 Pfam O-methyltransferase domain 136 341 IPR001077 GO:0008171
Vvi15g0796 359 PIRSF O-mtase 4 359 IPR016461 GO:0008168
Vvi15g0796 359 SUPERFAMILY "Winged helix" DNA-binding domain 17 114 IPR036390 -
Vvi15g0796 359 CDD AdoMet_MTases 199 292 - -
Vvi15g0796 359 Gene3D Vaccinia Virus protein VP39 112 359 IPR029063 -
Vvi15g0796 359 PANTHER O-METHYLTRANSFERASE 26 344 IPR016461 GO:0008168
Vvi15g0796 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 359 IPR016461 GO:0008168
Vvi15g0796 359 FunFam Caffeic acid 3-O-methyltransferase 3 111 - -
Vvi15g0796 359 FunFam Caffeic acid O-methyltransferase 112 359 - -
Vvi15g0796 359 Gene3D - 2 111 IPR036388 -
Vvi15g0796 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 356 IPR029063 -
Vvi15g0796 359 Pfam Dimerisation domain 37 85 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0796 Vvi-Chr15 16656764 16658632 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0796 1 347 Monolignol Biosynthesis Gene Families AT5G54160 59.091 5.25e-153 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0796 K13066 - vvi:100260786 722.235