Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0795 ATGGGTTCTTCAACAGAAGAAAGGCAGTACAGCCATGGCAGTACCGGTGAAGAAGAAGAAGTACAAGAGGCAGAGCACTACTGCAATGCCATGCAGTTGGTGGCCTCCTCTCTGTTACCTATGGTTATGCAAACGGCCATTGAGCTTGGCCTTTTTCATATCATTGCCAAAGCTGGTCAGGCCTCTGCCTCAGAAATAGCATCCCAGCTGCGTGCAAACAACCCGGCCGCACCCATCATGTTGGACCGCATCCTCTACTTTCTCACCTCTCACTCTGTCCTCACTTGCTCTGCGCTTGATGCTGATGGTGGGCGGCTCAAGAGGGTGTATGGAATCACACCTGTCTCCAAATATTTTGTCCCTGACCAAGATGGCATTTCATTGAGCCCATTGCTGACATTGACTCAGGACAAGGTCTTCATGGATAGCTGGTCAGTCTGCTCTATCTTTTTCGTTTTATCTACCTTGTCTGTGGGGTCACAACTGACTCCAGATATCTCTCAATACTTCTTCGGGTGCCATCTGAATAACTCAATTATTGAAGGAGGAATACCATTCAACAGGGCCCATGGAGTAAACGCATTTGAGTATCCTGGCAAGAACCCCAGATTCAATCAGGCCTTCAACACGGCCATGCTCAACCACACAATTATGATTACTAATAAAATCGTTGAATCCTACAAGGGTTTTGGGAATCTTAAGCAGGTGGTGGATGTTGGTGGCGGTCTGGGAACCACACTTGGTATAATCACATCAAAATACCCCAGCATCAAGGCAATTAATTTTGACTTGCCTCACGTTATACAGCATGCTTTGCCTTATCCTGGGGTGGAACACCTTGGAGGAGATATGTTTGAAAGTGTTCCCAATGGAGAAGCCATGTTTCTGAAGTGGATACTTCATGACTGGAGTGATGAACACTGCTTGAAGTTGTTGAAGAACTGCTACAAAGCTCTGCCAGAGCATGGCAAGGCAATTGTGGTGGAGGGGTTTCTCCCAGAAATACCGGAGGGGAGTGCTTCTGTGCAAGCTCTCTGTGAAGGAGATTTGATTATGATGACTCAAAACCCTGGAGGAAGGGAGCGGACAAAGCAGGAGTTCCTGGACCTGGCAATGGCAGCTGGATTTGCTGGCATCAGATTTGAGTGCCTTGTGTATAATTACTGGATCATGGAATTCTTCAAGTAA 1188 0.4714 MGSSTEERQYSHGSTGEEEEVQEAEHYCNAMQLVASSLLPMVMQTAIELGLFHIIAKAGQASASEIASQLRANNPAAPIMLDRILYFLTSHSVLTCSALDADGGRLKRVYGITPVSKYFVPDQDGISLSPLLTLTQDKVFMDSWSVCSIFFVLSTLSVGSQLTPDISQYFFGCHLNNSIIEGGIPFNRAHGVNAFEYPGKNPRFNQAFNTAMLNHTIMITNKIVESYKGFGNLKQVVDVGGGLGTTLGIITSKYPSIKAINFDLPHVIQHALPYPGVEHLGGDMFESVPNGEAMFLKWILHDWSDEHCLKLLKNCYKALPEHGKAIVVEGFLPEIPEGSASVQALCEGDLIMMTQNPGGRERTKQEFLDLAMAAGFAGIRFECLVYNYWIMEFFK* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0795 395 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 395 IPR016461 GO:0008168
Vvi15g0795 395 Pfam O-methyltransferase domain 174 377 IPR001077 GO:0008171
Vvi15g0795 395 FunFam Caffeic acid O-methyltransferase 120 395 - -
Vvi15g0795 395 MobiDBLite consensus disorder prediction 1 22 - -
Vvi15g0795 395 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 173 393 IPR029063 -
Vvi15g0795 395 FunFam Caffeic acid 3-O-methyltransferase 9 119 - -
Vvi15g0795 395 Gene3D Vaccinia Virus protein VP39 205 384 IPR029063 -
Vvi15g0795 395 SUPERFAMILY "Winged helix" DNA-binding domain 23 122 IPR036390 -
Vvi15g0795 395 PIRSF O-mtase 8 395 IPR016461 GO:0008168
Vvi15g0795 395 Gene3D - 37 152 IPR036388 -
Vvi15g0795 395 PANTHER O-METHYLTRANSFERASE 30 381 IPR016461 GO:0008168
Vvi15g0795 395 Pfam Dimerisation domain 41 89 IPR012967 GO:0046983
Vvi15g0795 395 Gene3D - 184 223 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0795 Vvi-Chr15 16644983 16646337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0795 13 395 Monolignol Biosynthesis Gene Families AT5G54160 49.227 9.32e-138 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0795 K13066 - vvi:100260763 717.998