Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0794 ATGCAGACTCATAATGGCAGTGATGGGAAGCAAGAGGCGGCAGAGCACTACTCCAGAGCTATGCAGATGGCGACCTCGTCTGTGGTATGTATGGCTATGCATGTGGCCAACGAGCTTGGCCTTTTTGACATCATTGCCAAAGTGGGTCAGGCTTCTGCCTCACAGATAGCATCCCACTTAGCCACAAACAACCCGAACGCACCCACAATGCTGGATCGCATTCTCTACGTTCTCACCGCTCACTCTCTCCTCACTTGCTCTGTCGATGACACTGATGATGGGCACTCCAAGAGGGTATACGGGCTCACCCCCGTCTCCAAATTATTCGCCCGTAACGAAGATGGGGTTTCGTTTGCTCCATTAATGGCGTTGAACCAGGACAAAATCTTCATTGGTAGCTGGTTCGAAATGACAAACGCGATTCTTGAAGGAGGGATACCATTTGACAGGGCCCATGGATCAAACGCATTTGAGTACCCTAGAAAGGACCTCAGGTTCAACAAGGTTTTTAACGCAGCAATGCACAACTACACAACCCTATTTATTAACGAGACCCTCGAGTCCTACAAGGGTTTTGAGCACCTCAAAGAGGTGGTGGACGTGGGTGGAGGTCTTGGGGTCACCCTCGGTGCCATCACATCCAAGTACCCCAGCATTAAGGGCATTAACTTCGACTTGCCTCATGTTATAGAACATGCCCCACACTATCCAGGCGTAGAACATGTCGGAGGAGATATGTTTGAGAGCGTTCCCAAAGGAGAAGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAACACTGCTTGAAGTTGTTAAAGAACTGCTACAATGCTCTACCGGAGCATGGGAAGGTGATAGTAGTGGAGGGGGTTCTTCCGGCAGCACCGGAAACAAGCGCTGTTGTGAAAGCTGTCAGTCAAACAGATTTGATAATGATGGCTCAAAACCCCGGAGGGAAGGAGCGGACTCGAGAGGAGTTCCTGGACCTGGCAACTGGAGCTGGGTTTGCTGGAATCAGATTTGAATGCTTTGTCCTTACTTATTGGGTCATGGAATTCTTTAAGTAA 1074 0.4907 MQTHNGSDGKQEAAEHYSRAMQMATSSVVCMAMHVANELGLFDIIAKVGQASASQIASHLATNNPNAPTMLDRILYVLTAHSLLTCSVDDTDDGHSKRVYGLTPVSKLFARNEDGVSFAPLMALNQDKIFIGSWFEMTNAILEGGIPFDRAHGSNAFEYPRKDLRFNKVFNAAMHNYTTLFINETLESYKGFEHLKEVVDVGGGLGVTLGAITSKYPSIKGINFDLPHVIEHAPHYPGVEHVGGDMFESVPKGEAIFMKWILHDWSDEHCLKLLKNCYNALPEHGKVIVVEGVLPAAPETSAVVKAVSQTDLIMMAQNPGGKERTREEFLDLATGAGFAGIRFECFVLTYWVMEFFK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0794 357 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Vvi15g0794 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 357 IPR016461 GO:0008168
Vvi15g0794 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 355 IPR029063 -
Vvi15g0794 357 SUPERFAMILY "Winged helix" DNA-binding domain 12 112 IPR036390 -
Vvi15g0794 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Vvi15g0794 357 Gene3D - 1 108 IPR036388 -
Vvi15g0794 357 Gene3D Vaccinia Virus protein VP39 110 357 IPR029063 -
Vvi15g0794 357 FunFam Caffeic acid 3-O-methyltransferase 1 109 - -
Vvi15g0794 357 PANTHER O-METHYLTRANSFERASE 20 343 IPR016461 GO:0008168
Vvi15g0794 357 FunFam Caffeic acid O-methyltransferase 110 357 - -
Vvi15g0794 357 Pfam O-methyltransferase domain 134 339 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0794 Vvi-Chr15 16636718 16638081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0794 20 357 Monolignol Biosynthesis Gene Families AT5G54160 57.227 1.52e-142 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0794 K13066 - vvi:100255690 721.079