Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0791 ATGGACATATATTCCTCTGGAGAGGACTTGATTATCAAGACAAGGAAACCGTATACTATTACCAAGCAGCGGGAGCGATGGACAGAGGAGGAGCATAATAGGTTTCTGGAGGCCTTGAAGCTTTATGGGCGAGCTTGGCAACGTATAGAAGAACATATAGGAACAAAGACTGCTGTGCAAATCAGAAGTCATGCACAAAAATTCTTTTCAAAGTTGGAAAAGGAGGCTCTTGTTAAGGGAGTGCCAATAGGTCAAGCTATAGACATAGAAATTCCTCCTCCACGGCCTAAAAGGAAACCAAGCAATCCTTATCCTCGAAAAACTGGTGTGGCTGCTCCTACTTTGCAAGCTGGAACAAAGGATGGGAAATTATTAGCATCAGTTTCTTCTTCGCATCCTGGTAAACAAATACTGGACTTGGAGAAAGATCCGCTTCCTGAGAGACCCAGTGGAGATGAAAAGCCAGGCAATGAAAATGAAAACCAGGATGAGGACAACTGCTCAGAAGTTTTTACCCTTTTCCAGGAGGCTCCTTGTACATCTATGTCTTCGGCAAACAAAAACTCTATACCAACACCAGTGCCACTCAGAAATTCATGCACTTTTCGGGAGTTTGTGCCATTAATGAAAGAGGGAAGTAACCAGGATGAAACAAATGAATCTTACATCACTGTTGAGCCCAAAGGAAATCAGAAGTTGGATAAACCTGATTTCAGGCAAAAAGCACAGGATAGTGGCATGAGTAAAGCCTCAAACTTGGAGAATTCTCACCCTTCACATGAGAAATTGGTTCAAGCTGAGAAAACTGATGAACCAAGCCAGTCTGAAAATTTTGGTTCACAGCCGAAAAATGAGATGCAAGCAGCTCAGAACTTCCCAAGACATGTCCCTGTGCACGTTCTAGATGGTAGCCTAGGAACGTGTACTCAGGCACCTTCCTCAGAAATGACGTATGGAGAATCCTTAGTTCACCAAATTGGAATTCATGGACACCCAAACTTGTTCCAGAATCCTGCTGCATCTGCAGCTACCGAACATCAAAATAACGGGTCAAGATCTTCCATTCATCAATCATTTCCCACTTTCCATACTCCCTTTGGCCCAATCCGCAGCAACCAAGATGACTACCGATCATTTCTCCAAATTTCCTCTACTTTTTCGAGTCTTATTGTATCAACTCTGCTACAAAATCCAGCAGCCCATGCTGCAGCAAGCTTTGCTGCTACCTTTTGGCCCTGCTCAAATATGGAAGCATCTGCAGATTCTCCTTCAGGCACTATTGGAGGTTTCCCAGCAAGGCAAATAAACCCAGCTCCAAGTATGGCAGCAATTGCTGCAGCTACTGTAGCAGCTGCAACTGCATGGTGGGCAGCCCATGGAGTGCTTCCCTTGTGTGCTCCTCTTCACACTGGCTTTACCTGTGCTCCTGCATCTGCAACCTCAGTTCCACCAACAAATACAGGTCAAGCTCCAGCAGCCAACACAGAGAGAAGAGAAAACACTCCTCAAGATCAACAACTGGACCTAGAATGCTCTGAAGCTTTGCAAGCACAACATTCAGCATCTAAATCACCAGCCATGTCATCTTCAGACTCTGAGGAGAGTGGAGGTGCAAAGCCAAATACTGAGTCAACTGCTCCTGATAATGAGAAAAACACTACAGCAGTAACTGAGCTCAATGATCCGACCAAGATGAAGAGTAGAAAACAGGTGGACCGTTCCTCGTGTGGTTCCAACACTCCTTCTAGCAGTGAAGTAGAGACAGATGCATTAGAGAAGCATGAGAATGGCGAGGAAGAGTGCAAAGAAGCTGATGTAAATCAGGCAGCTGGTGAGGCTAACAATCGCCGTTGTAGAAGCACCAGCATCCTTAATGAATCCTGGAAGGAGGTCTCTGAAGAGGGTCGGCTGGCCTTCCGAGCACTCTTCAGCCGAGAAGTATTGCCACAGAGCTTTTCTCCTCCACATGATTTGAAGAATAAGGGGCTCCAGAATAAGGATTTCATAGAGAATGAGCAGGGTGGAGATGAGAAACATGAAAATGCCTTGCAGTTAGACCTCAACAGCAAGGCATGGGGACCTTGTTCCAGTCACCAAGATGTGGAGAAAAATGGATTGATGGAAAATGACAACAGAGAAGAAGGGCTGCTCACAATAGGGCTTGGGTATGGAAAGATTAAAGGTCGTAGAACAGGATTTAAACCCTACAAAAGGTGTTCAGTAGAGGCCATTGATAGCAGGGTCACAAACTGCTGCAGCCAAGGTGAGGAAAAAGGCCCCAAGAGGATACGCCTGGAAGGGGACGTTTCAACCTGA 2316 0.4564 MDIYSSGEDLIIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGVPIGQAIDIEIPPPRPKRKPSNPYPRKTGVAAPTLQAGTKDGKLLASVSSSHPGKQILDLEKDPLPERPSGDEKPGNENENQDEDNCSEVFTLFQEAPCTSMSSANKNSIPTPVPLRNSCTFREFVPLMKEGSNQDETNESYITVEPKGNQKLDKPDFRQKAQDSGMSKASNLENSHPSHEKLVQAEKTDEPSQSENFGSQPKNEMQAAQNFPRHVPVHVLDGSLGTCTQAPSSEMTYGESLVHQIGIHGHPNLFQNPAASAATEHQNNGSRSSIHQSFPTFHTPFGPIRSNQDDYRSFLQISSTFSSLIVSTLLQNPAAHAAASFAATFWPCSNMEASADSPSGTIGGFPARQINPAPSMAAIAAATVAAATAWWAAHGVLPLCAPLHTGFTCAPASATSVPPTNTGQAPAANTERRENTPQDQQLDLECSEALQAQHSASKSPAMSSSDSEESGGAKPNTESTAPDNEKNTTAVTELNDPTKMKSRKQVDRSSCGSNTPSSSEVETDALEKHENGEEECKEADVNQAAGEANNRRCRSTSILNESWKEVSEEGRLAFRALFSREVLPQSFSPPHDLKNKGLQNKDFIENEQGGDEKHENALQLDLNSKAWGPCSSHQDVEKNGLMENDNREEGLLTIGLGYGKIKGRRTGFKPYKRCSVEAIDSRVTNCCSQGEEKGPKRIRLEGDVST* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0791 771 MobiDBLite consensus disorder prediction 244 259 - -
Vvi15g0791 771 SMART sant 23 71 IPR001005 -
Vvi15g0791 771 MobiDBLite consensus disorder prediction 136 161 - -
Vvi15g0791 771 MobiDBLite consensus disorder prediction 224 288 - -
Vvi15g0791 771 MobiDBLite consensus disorder prediction 572 586 - -
Vvi15g0791 771 MobiDBLite consensus disorder prediction 479 561 - -
Vvi15g0791 771 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Vvi15g0791 771 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Vvi15g0791 771 MobiDBLite consensus disorder prediction 587 606 - -
Vvi15g0791 771 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Vvi15g0791 771 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Vvi15g0791 771 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Vvi15g0791 771 MobiDBLite consensus disorder prediction 88 164 - -
Vvi15g0791 771 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Vvi15g0791 771 CDD SANT 26 69 IPR001005 -
Vvi15g0791 771 PANTHER SWI/SNF COMPLEX-RELATED 8 646 - -
Vvi15g0791 771 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Vvi15g0791 771 MobiDBLite consensus disorder prediction 270 288 - -
Vvi15g0791 771 MobiDBLite consensus disorder prediction 479 617 - -
Vvi15g0791 771 Gene3D - 26 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0791 Vvi-Chr15 16591364 16601303 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi15g0791 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0791 K12133 - vvi:100250535 1468.75