Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0790 ATGTATGCCAGGGACCTTACCCAAGGCTTGGCTGACACGCAATGTGGTTCACCATTATACATGGCTCCAGAGATCATTCAGAACCAAAAATATGATGCGAAGGCTGACTTATGGAGTGTTGGAGCAATTTTATTCCAGCTGGTGACTGGGAGGCCGCCATTTGATGGCAGTACCCAATTTCAGCTTTTTCATAACATTTTATCCGCCAGTGAGCTACGGTTTCCGCAAGGTGCCTTACAAGAACTTCATCCAGACTGTGTGGATCTTTGCAGACGCCTTTTACGTCAAAACCCAGTTGAGCGACTAACATTCAATGAGTTCTTCAATCATAAGTTCCTGGTGGAGCCCAGGTTGACAGTGGATGTTGAGCAGCCTTCCTTACTTCCACAAACCAAACCTCTGGTTGTGCAGTTTGAATGCTTAAGAGGCAAAAACTTGCCTACAGACTCTACTCAGAGCCCTCAATTACCTTTTGCACATCAGCTCAACTCATCTACCAGAAACCCAAGTTTAACTTCATCAATACATGATGTTAACAGCAAAATACTACATAGACAAGAACATGGTAGCACATCCAGCAATAAAGGTGGTTATCGATTTATGCCAAGCATTGCACATGACGATCCAATTGCTGATTCAATGGAGTCCATTGAGAAGGGATATGTTCTTGTCAATGCACATTTTGCTTCAATGGAGACACTCTCTTCTTCGCTTGAAACATCCCTGCAAGATAATCCTGCTGCTAGAGCTACTATCTACTCTCCAAATAAGAATGATGAGGATGTAGCTGTTGCAATGAAGACAACGGAACTGACAGCTACTTCAGTTGGTGCTGTGGAAAGCCCTGGGAACTATGAACCAGATCCATCTACACCATCTTGTGCATCAACTATATTAAAGGAGGATCAAGAACTATCCGTTTTGCATTCTTCAAGGAGGCTCCACTTGTTACATAAGTATGCTCATGCTATTTCAAAACTAGCTCAAGAAAAGTTAAAAGATGGTCAATTTCTGGAGTCATTCTCAGTTGAGCTGGTAGTTCTGGCTATATGGAAGAAAGCTGTACAAGTTTGCAGCTCTTGGCTGGCCTCTACTGCAGGGAGTGATTTACCTGAAACCTCTTCAACTAATGAATCTGCCCCTGTTCAGGAAGTTGCTGGCCTGTCTCTAAACTCACAAGAAGAAGAAATAGATTTTAGCAAGCCTTCTTCTGTTTCCATATTGGTGGAGAGTGAGTTTATTGCTGCATGTGATCATGCAGAAAAGTTATCTAGTCATCTTCAAGATATGGATGGTAATAGCAAGATGCCAGATGCAATGGAAATAATATTCCAAGCAGCTCTCGCATTTGGGAAAAGTGGTGCTGTGGATGAATATATGGAAAACAAGGGTAGTGCAGCAGCGTTGTACTCCAAAGCAATGCTTCTGCTTTCATTTATTGTAGGAGAAGCTACATTGCTGCCACTCAACCCTCCTTTTTCATTAACTCCCGCCAATAAGCACCGAATCCAAAGATACATTATCTACCTGGAGTCCCATCTAACTCGCTTCCAAATCTCACAGCTGCCTTCCAAGTAA 1578 0.4284 MYARDLTQGLADTQCGSPLYMAPEIIQNQKYDAKADLWSVGAILFQLVTGRPPFDGSTQFQLFHNILSASELRFPQGALQELHPDCVDLCRRLLRQNPVERLTFNEFFNHKFLVEPRLTVDVEQPSLLPQTKPLVVQFECLRGKNLPTDSTQSPQLPFAHQLNSSTRNPSLTSSIHDVNSKILHRQEHGSTSSNKGGYRFMPSIAHDDPIADSMESIEKGYVLVNAHFASMETLSSSLETSLQDNPAARATIYSPNKNDEDVAVAMKTTELTATSVGAVESPGNYEPDPSTPSCASTILKEDQELSVLHSSRRLHLLHKYAHAISKLAQEKLKDGQFLESFSVELVVLAIWKKAVQVCSSWLASTAGSDLPETSSTNESAPVQEVAGLSLNSQEEEIDFSKPSSVSILVESEFIAACDHAEKLSSHLQDMDGNSKMPDAMEIIFQAALAFGKSGAVDEYMENKGSAAALYSKAMLLLSFIVGEATLLPLNPPFSLTPANKHRIQRYIIYLESHLTRFQISQLPSK* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0790 525 SUPERFAMILY Protein kinase-like (PK-like) 3 186 IPR011009 -
Vvi15g0790 525 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 4 447 IPR045269 GO:0004674|GO:0006914
Vvi15g0790 525 ProSiteProfiles Protein kinase domain profile. 1 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0790 525 SMART serkin_6 1 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0790 525 Gene3D Transferase(Phosphotransferase) domain 1 2 186 - -
Vvi15g0790 525 MobiDBLite consensus disorder prediction 275 294 - -
Vvi15g0790 525 Pfam Protein kinase domain 4 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0790 Vvi-Chr15 16585626 16590574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0790 9 112 CBL-interacting serine-threonine protein kinases AT1G30270 41.818 1.95e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vvi15g0790 Pkinase 7.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0790 - K08269 vvi:100267700 1017.3