Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0789 ATGTCCCCTCTTCTCTTTTTTTTCTCCTTCTTCTTCTTTACACTTGGTGCCTCTCATTCTCTTCCTCGACTGAAACTGAGTGGTTCAGTTTCAAATGAGCGCAATGACAAATGTGGGAGCATTCATATCGCATTCCCTTTTCACCTCAACAGCTCTTCTAATTCCCCTGCATGGCCTTCCAGCTATGCATTCCGTCTCTCTTGCGTCAACTCCACCACCCTTTTCCTCAACATTGCCTCCAACTCTTACCGGGTCCTCCAGTTCTTCTCAGATGGCATCTTGGTTGATTTTCCGGGCGCCACTTCTTGTCGTCAGTATAACGATTTGAATTCATTTCGTTTCTCGGGAAATGACCACTTTGGCATCTCTATTGACAATTTCATTGGCTTGTACGACTGCGAGGATTCTTCCCTGTGCAGAGCTGATTGCGAGATCAATGTCATGCCTGCTTGTGATTCCAATGGCAATGGCAATGACAGTAGTAGGACTTCCCCTGCCTGCTGCTACGCACTCTCAGATGGCGGTGTTTGGCAAACTGGAAATGGGTTTTCAGTGTTTTCCCAGTTTGGGTGCAGGGGATTCTCTTGTTGGCTTCTTCAACCGGGCACCAATCAAGGGAAGCGTGGGGTTAAATTGGAATGGGCTGTGCCCAAGAACTCATCTCAGGGAGTCTGTGCTATAAATGCCTTCATGGTCAATGCTACAAGCGTCCAACAAGGGATAAGGTGCATGTGCCGGGATGGCTTTGTGGGGGATGGCTTTGCACATGGACTCGGATGCTCCAAATCCTGCATCAAGGATGGAAGGGAAGCAAATGGCAAGGACTGTAACACCGAAAGACGTAATGAAAAGAAAGTAGTAATTCTAGCTGGAGTTCTCGCTCCGGTTTTCATCATTGCCTCCTTGATTGGACTCTTTTGTCTATTCAAACGGCATGTTAAGTCGGGGACATTTGATCCTGATCAGGCCCACTATCAGAGCACCATCTCATTCCGGAAAGCTTGTAGGACTCAGTTGTTTACTTTTCATGAGCTAGAAGAAGCCACACGAGGATTTGAAGATGGCCAAAAGCTTGTAGATAGCAGTAATGGAACATTGTATTCTGGGGTCCTTGGGGATGGATCCCATGTTGCTGTGCACAAGGTTCAGTGTGGGAATGAAAGAGACCTCATTCAGGTTTTATCCCGGGTGGAGGTTTTATCTGCAGTTCTACATAGGAACATGGCTCGCCTCCTTGGATGCTGTATCGACTCTGGTTACACCGCACTGGTGGTCTATGAGTATCCTGCAAATGGCACCCTGGAGGAGCACCTGCATCAAAGCAGAGGGAAAAATCTGTGTCTTGACTGGTACAAGAGACTGAAAATTGCAGCTGAAACCGCCAGCATTCTTTCCTTCTTGCAGCATGAGATCTCTCCTCCCATCTTCCATCATGATCTCAAATCAGGTTGCATCTTCCTGGACCATGACTTTTCAATCAAAATTGCTGGATTTGGGCTACTGAGCTCTGCCCTTGGGGATGGAACTCAATCCTATCACAACTCTGGAGGTTCATGTTTTCATAGAAATGACGTTTACAACCTTGGAGTAGTCCTTTTGGAAATCATTGCAGGATCCAGAGTCTTGGACCCACCAACAGTAGCTTTGCAAAAAATAGGGAGTGGAAAGCTGGAGGAGATTGTAGACCCAGTTCTTTACTACCATGAACAGCCACCATTCCGCAGAGAGCAGATAGAGGTAGTTGCAGACCTGGCTACAAGGTGCCTCTTGTTTGGTGGGGATGGAAAACTAGGTATGATGGATGTCACAAGGGAGCTGGTACACATGATGAAAGAGAGCATGGATGGGTGTAGTAAGAGGGGTCCCGCATTGGAGGAAACATTTTCCAACTCAAGCCTCCTTCAGATGATATCAATTGGAAGAAGGAAATCCTCAGGCTCTCAGCCAGTGCCTCTTAGGATCCAAATGCTGCTGATCTGGTCCTATGTATGTAATTTCCTCTTCAACTTCTTCCTCTTCTTCTTCAATCCCAGGATCCCAGAGATGAGTGATCAAGTGAACAAACATGAGGCTCAAGAAACACATGTTCAAGAAACTCAACTGCAACAACACTCAGTTCCCCGTCTGAATGAGAGGATCCTCTCATCCCTGTCAAGGAGATCTGTTGCTGCACATCCTTGGCATGATCTTGAGATTGGACCAGGAGCACCCCAGATTTTCAACTGTGTTGTTGAGATAACAAAAGGAAGTAAGGTCAAATATGAACTTGACAAGAAGACAGGTCTGATTAAGGTTGATCGAATTTTATATTCGTCAGTGGTCTACCCTCATAACTATGGTTTCATCCCTCGCACATTATGTGAAGACAATGACCCAATGGATGTCTTAATCCTCATGCAGGAGCCAGTCCTTCCTGGTTGTTTCCTGCGAGCTAGAGCCATTGGATTAATGCCCATGATTGATCAGGGAGAGAAAGATGATAAGATCATTGCAGTTTGCGCTGATGATCCTGAGTATAGGCATTACACTGACATCAAAGAGCTGGCCCCTCATCGCCTTGCTGAGATCCGACGTTTCTTTGAAGAATATAAGAAAAATGAGAACAAAGAGGTTGCAGTTAATGATTTCCTCCCGTCAACCACTGCTGTTGAAGCCATCCAGTACTCAATGGACCTTTATGCTGAATACATTATGCAAACCCTGAGGCGCTAG 2712 0.4624 MSPLLFFFSFFFFTLGASHSLPRLKLSGSVSNERNDKCGSIHIAFPFHLNSSSNSPAWPSSYAFRLSCVNSTTLFLNIASNSYRVLQFFSDGILVDFPGATSCRQYNDLNSFRFSGNDHFGISIDNFIGLYDCEDSSLCRADCEINVMPACDSNGNGNDSSRTSPACCYALSDGGVWQTGNGFSVFSQFGCRGFSCWLLQPGTNQGKRGVKLEWAVPKNSSQGVCAINAFMVNATSVQQGIRCMCRDGFVGDGFAHGLGCSKSCIKDGREANGKDCNTERRNEKKVVILAGVLAPVFIIASLIGLFCLFKRHVKSGTFDPDQAHYQSTISFRKACRTQLFTFHELEEATRGFEDGQKLVDSSNGTLYSGVLGDGSHVAVHKVQCGNERDLIQVLSRVEVLSAVLHRNMARLLGCCIDSGYTALVVYEYPANGTLEEHLHQSRGKNLCLDWYKRLKIAAETASILSFLQHEISPPIFHHDLKSGCIFLDHDFSIKIAGFGLLSSALGDGTQSYHNSGGSCFHRNDVYNLGVVLLEIIAGSRVLDPPTVALQKIGSGKLEEIVDPVLYYHEQPPFRREQIEVVADLATRCLLFGGDGKLGMMDVTRELVHMMKESMDGCSKRGPALEETFSNSSLLQMISIGRRKSSGSQPVPLRIQMLLIWSYVCNFLFNFFLFFFNPRIPEMSDQVNKHEAQETHVQETQLQQHSVPRLNERILSSLSRRSVAAHPWHDLEIGPGAPQIFNCVVEITKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDPMDVLILMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELAPHRLAEIRRFFEEYKKNENKEVAVNDFLPSTTAVEAIQYSMDLYAEYIMQTLRR* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0789 903 ProSiteProfiles Protein kinase domain profile. 352 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0789 903 SUPERFAMILY Protein kinase-like (PK-like) 332 606 IPR011009 -
Vvi15g0789 903 Hamap Inorganic pyrophosphatase [ppa]. 738 894 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi15g0789 903 Pfam Protein tyrosine and serine/threonine kinase 357 510 IPR001245 GO:0004672|GO:0006468
Vvi15g0789 903 Gene3D Transferase(Phosphotransferase) domain 1 430 621 - -
Vvi15g0789 903 CDD pyrophosphatase 738 891 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi15g0789 903 Pfam Inorganic pyrophosphatase 742 893 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi15g0789 903 FunFam Putative WAK-related receptor-like protein kinase family protein 430 619 - -
Vvi15g0789 903 SUPERFAMILY Inorganic pyrophosphatase 719 900 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi15g0789 903 FunFam probably inactive receptor-like protein kinase At2g46850 324 428 - -
Vvi15g0789 903 Gene3D Inorganic pyrophosphatase 721 899 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi15g0789 903 PANTHER INORGANIC PYROPHOSPHATASE 656 903 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi15g0789 903 ProSitePatterns Inorganic pyrophosphatase signature. 789 795 - -
Vvi15g0789 903 Gene3D Phosphorylase Kinase; domain 1 324 428 - -
Vvi15g0789 903 FunFam Soluble inorganic pyrophosphatase 4 721 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0789 Vvi-Chr15 16574044 16580800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0789 186 606 Receptor kinase-like Gene Family AT2G23450 35.065 2.14e-58 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-3 Vvi15g0789 PK_Tyr_Ser-Thr 7.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0789 - - vvi:100262540 1296.18