Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0787 ATGGAGTTTGGGCAAGAAATGAAAGGTTTTTGTGATAAAGAAGAAGAACAGGAGGAGGAGGAAGAAGAGGAAGAAGAAGAAGAGGAAATAATGGGAGAAACGTGTAAGGTACCCTTTTCTTCTTCATCTTCATCTTGTGCTTCTCCTATGTACAAAGGCGTTGCTCCGGAGCCATATAGGTATGAGCAGCAGCAGCAGCAAAGGGCGTGGCTGGGAACGTCGGAGCCTGAAGAAGAGGCAGCTAGATCTTATGATCGAGCTGCACTGGAGCTTGGTGGCCCAGATGGAGTCACCGATTCGAGCAGGAAGCTGGAATTTGTGAACTTATCACTGAGAAATAACGAGGACGGTGATGGAGGAGGAGGATGCAGCAGCAGCGTCGGTGGTGGGGTGTGTGTTGAGAGAGAGCATATGTTTGACAAGGTCGTGACACCAAGTGATGTAGGAAAACTCAACCGCCTTGTCATACCAAAGCAGCATGCTGAAAAGTACTTTCCCCTTGACTCTTCCGCTAGCGATAAGGGCCTCCTCTTGAATTTCGAAGATCGGGACGGGAAGCCTTGGCGATTCCGATACTCCTACTGGAATAGCAGCCAAAGCTATGTGATGACCAAAGGGTGGAGCCGCTTTGTCAAGGAGAAGAAGCTTGATGCCGGTGATATAGTCTCCTTTGAGCGCGGTGTTGGAGAATCAGGTAAGGACCGTTTGTATATAGACTGGAGGCGCCGGCCTGATGCACCGGACCCCACTTCCCTCTCCCATCTACATCTTCCAACCCAGCTACCATTCTCCCAGTCCGTCCGATGGGGCAGACTATACTCACTCCCCCAATCACCGTCCATGTCCATGAACATGCCCCAAGGCCATGACCATATGCAGCAACTCAATTACAGCAGTATTCATCCTTATCATCGCCACCACCATCACCACCCCCACCACCATCACCACCACCACCACCACCACCACCAGAGGAACACCTTAGGCGGTGGTTATCATGACTACAATGCAGTGACTTCAGGTTCAGGCTCCCTATACTACCTATCATCATCATCTTCCTCGCATCAGATTGGGGCAGTGCAACAGGGAGGGGATGCTCCCATGGTTATCAACTCCGTACCGGTTGTCCACGGTAAAACAACAGCCAAGCGTCTCAGGCTATTTGGTGTAAACATGGAGTGTTCAACCCCAGATGATCACCCCGAGTGCAACATATTGCCTTCAACCGCAATACCGCATGTTACAATGGCTTCTCTCTCTCCTCATCTTCCCTCCTCTTCTCTCCCTCCTCTCCAATTAAGGCTCTTCAATGGCTCCCCGCTTCAAGCAGTGCCAGATGAGTTTCCAAAGAAAGGGAAGACTTCCTTGTCCTTTGATTTGGATCTCTGA 1386 0.5058 MEFGQEMKGFCDKEEEQEEEEEEEEEEEEIMGETCKVPFSSSSSSCASPMYKGVAPEPYRYEQQQQQRAWLGTSEPEEEAARSYDRAALELGGPDGVTDSSRKLEFVNLSLRNNEDGDGGGGCSSSVGGGVCVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSASDKGLLLNFEDRDGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGVGESGKDRLYIDWRRRPDAPDPTSLSHLHLPTQLPFSQSVRWGRLYSLPQSPSMSMNMPQGHDHMQQLNYSSIHPYHRHHHHHPHHHHHHHHHHHQRNTLGGGYHDYNAVTSGSGSLYYLSSSSSSHQIGAVQQGGDAPMVINSVPVVHGKTTAKRLRLFGVNMECSTPDDHPECNILPSTAIPHVTMASLSPHLPSSSLPPLQLRLFNGSPLQAVPDEFPKKGKTSLSFDLDL* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0787 461 Gene3D AP2/ERF domain 50 101 IPR036955 GO:0003700|GO:0006355
Vvi15g0787 461 MobiDBLite consensus disorder prediction 305 330 - -
Vvi15g0787 461 MobiDBLite consensus disorder prediction 305 325 - -
Vvi15g0787 461 CDD B3_DNA 137 233 IPR003340 GO:0003677
Vvi15g0787 461 SUPERFAMILY DNA-binding pseudobarrel domain 136 243 IPR015300 -
Vvi15g0787 461 ProSiteProfiles AP2/ERF domain profile. 50 101 IPR001471 GO:0003700|GO:0006355
Vvi15g0787 461 SMART B3_2 139 244 IPR003340 GO:0003677
Vvi15g0787 461 MobiDBLite consensus disorder prediction 62 81 - -
Vvi15g0787 461 Coils Coil 7 36 - -
Vvi15g0787 461 MobiDBLite consensus disorder prediction 13 31 - -
Vvi15g0787 461 MobiDBLite consensus disorder prediction 1 51 - -
Vvi15g0787 461 SUPERFAMILY DNA-binding domain 51 98 IPR016177 GO:0003677
Vvi15g0787 461 FunFam B3 domain-containing protein 132 253 - -
Vvi15g0787 461 Gene3D - 132 252 IPR015300 -
Vvi15g0787 461 ProSiteProfiles B3 DNA-binding domain profile. 139 244 IPR003340 GO:0003677
Vvi15g0787 461 Pfam B3 DNA binding domain 139 243 IPR003340 GO:0003677
Vvi15g0787 461 SMART rav1_2 50 116 IPR001471 GO:0003700|GO:0006355
Vvi15g0787 461 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 399 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0787 Vvi-Chr15 16540264 16541649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0787 107 460 RAV Transcription Factor Family AT2G46870 46.556 8.19e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi15g0787 B3 3.9e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0787 - - vvi:100259130 807.749