Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0784 ATGAAGGATTTCGATCTTCACGCGGTGTTCATAAGCTACATGGAGTCAGAAAAGATACAAACATATGGTCCGGAGTGGTTCTTCTTCTCTCCTCTTTATAAAAAGTACCGAAAGCGCAATCAATTACAGAGGACAACAAATGTTGGCTACTGGAAACCCACCGGTCCGGCTCGTGATATCAAGCGTGGGGTCACCGAAGAGGTGATCGGTACCAAGAAAACTTTGGTTTTCCATATGGGCGGTGGCCATGGCCATGCGGACGTCACTACTGGCTGGGTTATCCACGAGTAA 291 0.4777 MKDFDLHAVFISYMESEKIQTYGPEWFFFSPLYKKYRKRNQLQRTTNVGYWKPTGPARDIKRGVTEEVIGTKKTLVFHMGGGHGHADVTTGWVIHE* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0784 96 SUPERFAMILY NAC domain 22 96 IPR036093 GO:0003677|GO:0006355
Vvi15g0784 96 ProSiteProfiles NAC domain profile. 1 96 IPR003441 GO:0003677|GO:0006355
Vvi15g0784 96 Pfam No apical meristem (NAM) protein 21 96 IPR003441 GO:0003677|GO:0006355
Vvi15g0784 96 Gene3D NAC domain 5 96 IPR036093 GO:0003677|GO:0006355
Vvi15g0784 96 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 15 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0784 Vvi-Chr15 16505034 16505772 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0784 18 96 NAC Transcription Factor Family AT3G10480 46.835 2.10e-18 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi15g0784 NAM 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0784 - - vri:117931638 134.42