Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0783 ATGTCAACAAAAGAGGAGATACTCAGGATTTTTGAATTGTTACCAGTGGGCTACGGATTTCGGCCCACCGATGAAGAACTGGTTTATCACTATTTGAAGTCGAAGATACTGGGCACAGAATCCCACGAAGGTATCATCCCTGTCATTGAAGCCTACAAAATGGATCCTTGGTTTATATCAGGTTCTTGTTTACTTCTTTCAGAGATACAAACAGATGGTCCGGAGTACTTCTTCTTCTGTCCTCTTCATCCAATGTTCCCAAATCGCAATCGAGTACGGAGGAGAACAACTACTGGTTACTGGGCAAAAACCGGTCCGGATAGTGAAAGCAAGGGTGAGGCCACCGAAGAGGTGATTGGTACCAAGAAAACTTTTGTTTTCAAAATGCACGGTGACCGTGACCGTGGCGTTGCGGACATCAATACCGGCTGGGTTATCCACGAGTACAGCGCATGTATGGATTCCGCTCCTGCCAATAAGACCTTGGTTCTGTGTCGCTTAAAGACAAACAGGGTCTGGTTTTCCCCCACAATCAACAATGGCAAGTTACCCAAACAACTATCCAATCAAGAAACTTGGCCGATGAATATGGACGTTGACGATTCATCTACAGATACTGGGTTTCATCTGAATGGCCCACCCAACATCATGGGTTGGGTGGGCCAGTTGTTAACAATATTGCCTCTGATATTAAAAATTATCAACTAG 708 0.4492 MSTKEEILRIFELLPVGYGFRPTDEELVYHYLKSKILGTESHEGIIPVIEAYKMDPWFISGSCLLLSEIQTDGPEYFFFCPLHPMFPNRNRVRRRTTTGYWAKTGPDSESKGEATEEVIGTKKTFVFKMHGDRDRGVADINTGWVIHEYSACMDSAPANKTLVLCRLKTNRVWFSPTINNGKLPKQLSNQETWPMNMDVDDSSTDTGFHLNGPPNIMGWVGQLLTILPLILKIIN* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0783 235 SUPERFAMILY NAC domain 10 168 IPR036093 GO:0003677|GO:0006355
Vvi15g0783 235 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677|GO:0006355
Vvi15g0783 235 Gene3D NAC domain 23 173 IPR036093 GO:0003677|GO:0006355
Vvi15g0783 235 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 14 182 - -
Vvi15g0783 235 Pfam No apical meristem (NAM) protein 15 150 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0783 Vvi-Chr15 16492191 16493199 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0783 11 167 NAC Transcription Factor Family AT4G35580 44.099 1.47e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi15g0783 NAM 1.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0783 - - vri:117931638 357.836